Scaffold Ga0079957_1001168

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1001168
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24170
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F054870	Metagenome / Metatranscriptome	139	N
F062760	Metagenome	130	N
F063689	Metagenome	129	Y
F066774	Metagenome / Metatranscriptome	126	Y
F073551	Metagenome	120	Y
F082685	Metagenome	113	N
F104778	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100116811	F063689	N/A	MITTMEVLFRYLVFDDVGEPIMRFRTKHEAECYILHRPNHKIQRLAPKPKENPFDLIKDEPPF*
Ga0079957_100116813	F104778	AGGA	METKAWLIEEYSKDGQLVWKMISFFEPDSIQWMRDIRGKSHNLVISELGVKNSKTINGIEKKYDSSKFVIGH*
Ga0079957_100116814	F066774	GAG	MTQDNTMASLELWVKQLQGTLDVQEIARTKPAPIPDIAIPYLVFLRPYDKVGLLASTNKRRFTKCNIEFLFDGNTRKLKDVKMINQDDEDGN*
Ga0079957_100116819	F054870	AGGA	MKLLTALLIALPIASFAGEPAKLRYNWVEKKWNYAPKEAKLKYNWTADQYEFVMPGSQLKFNTQSNNYEYVQTQISNPYKSEIGE*
Ga0079957_100116830	F082685	AGTAG	MDMQEHTKHALDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK*
Ga0079957_100116831	F073551	N/A	MQTSHETIDDIFNFLQNKTIKDIDADYHDNKNYLVILLSDGSICYISSSDSLFMAIERHVIN*
Ga0079957_100116836	F001991	GAGG	MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSNGAPVNLTGATIDASIIRRQLSNIRDSRYGLTFDIADYTPPPSPVSLTISNRVDAAGTFTLEIDESTWSVISTDPQLDINAQNCVGFSGRIKISFPASGSTPAQDMIIFLLFLVRSDGVVN*
Ga0079957_100116842	F002085	AGAAG	MDNIVPLQNTNNIRMADFVRVTTATATYRFATTPSVLTIPAVDSQPFDALGSLIKISDVQRDIKSTSNETSITLVGIDTALLGWVLGHDIKGSLIEMWHGFFNDQNELITTGGTGGLYKFFTGYISSFQISEQYMEEAREYVGVITASASSIQIILQNRTAGRYTNNNAWTFWNSGDTSMNRVNFIETINYAFGKDT*
Ga0079957_100116843	F000934	AGCAG	MATLNQILAVSESVGINDHRFIGQTLSRNQRIATSEILTVQPFMFDMKPMNYLLYSQNRTLLSTLRSADRQFEQYLNFGSTGWWNYIAYQGNMSSAQISACQYETSSANKTIVLGSLPTMGSTEYIVKAGDFLQINRYAYIATADVQRGGGSTVNIPVHRTIMTTLTSPMSAVIGQYGITQSLGGNTYIGVTFPVILQEYPTYTFVPMTNDSFINWNGTFKAIEAVL*
Ga0079957_10011686	F062760	N/A	LEELIKQGKLPQVTIKEKADSKRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGVQVPYVRSTTDLTVEEFTNYIQQIESYFAQLGWSID*