Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1001071 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1001071 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25282
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (41.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

25282

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (41.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018711	Metagenome / Metatranscriptome	233	Y
F038601	Metagenome / Metatranscriptome	165	Y
F045713	Metagenome / Metatranscriptome	152	Y
F056571	Metagenome	137	N
F082606	Metagenome	113	N
F097251	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100107119	F038601	N/A	MKLYAPENKGKYVWQTADAKTRAVSYSVTTSRTAPPDACYGHPMGKYDDSGLYLTFCPNVGADDPKSPQAARYVLHPMAAAERDRADRERLWREI*
Ga0079957_100107121	F056571	N/A	LLWVYPVRINFSANLARSTAAEVNFRVDTVYGLLTEGQSRGQIVQFGSNQWKCSARQVDEYIQRARIRLEEDAAMTRPSWIAEALGRARTYEQSAYKRGQTQVALNAIQLQAKLIGLEI*
Ga0079957_100107129	F018711	N/A	MKPEITAVGRLLKKKGDAPRIHKVIAVKSDGQVRTIINKEMT*
Ga0079957_100107133	F045713	AGAAG	MNGRIWEGSCTYLKCADGMIEGRFIFPTPNNPEILGALMGRLAEGVEVITCTEDGEDGD*
Ga0079957_10010715	F082606	N/A	MSLVVLTAQCSGIVVSTIPTGQKTYKMSPNSRGVRAERPLWKFNAGMPCYVRGWPAYEATIVDRVEGCTWPTYLVQAFDSGAVYKISQLYLSKRPIENR*
Ga0079957_10010717	F097251	N/A	MIILTDAQLVELTNRINQIRTIIDSAQVIKATAAQPKTVTEASAQAPKPVVKQRRKARARRVMLNTAQVVEIKRRLAAGNESAAKIARDYGVHVTTVNLIKYGKTWKEVQVPA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1001071

Overview

Ecosystem & Geography

Associated Families

Sequences