Scaffold Ga0079957_1001036

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1001036
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25635
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (37.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F002333	Metagenome	569	Y
F003601	Metagenome / Metatranscriptome	477	Y
F022857	Metagenome	212	Y
F053230	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10010362	F001165	N/A	MNNTPRIPDAIDTQRLAAMQLVAKLKESADKHGVGFVGGFIAPNGEKFMMSNMDDEDTNALLPEDLR*
Ga0079957_100103629	F002333	N/A	MTTQALQELNPAQELIYTRTNLRRANPDFDDTDIAGIYLQDQTCVVVRRDGSQQSYERQGCKDAFLSYTTRLKDFFSYLGPDYRGPSIWRDNAYVIFKGWHYVHQHGKRTSNAMLQRQWADKFMRLTDSRKLITLLQSDQTDLGHLVAPDGMRLPERPIDLNSDLDDEQDQQQPILSEPYCSCGSFQRQLNNLEGLQAEIEGYKPRCIHLTWFNKYRDLLCRRTEVRNASPSGTPDKCVAWWYAPPADHTSDGRFMLLHTTRGAQAPLTHWRHYKPKEIFTQHHAWDLFNNMADAGYVPFPGTSLPQLNNAFKDNE*
Ga0079957_10010363	F001120	GAGG	VTEKSSFNFDKTIAGFNITEHGIKSFSKSLKLGPFQITLNARGSGIRGSIGIPGTGLSKRNIKLF*
Ga0079957_100103631	F053230	N/A	MFESILSAVLPVIQDIFWTACAAMLAYALNKIQSHFQNI*
Ga0079957_100103632	F001018	N/A	MTQITQTKLKALNVIQLYEHYGALERSLPLLTLESQELAKAELEACANLRSEKIDRIYYAMANHEDAMERIKKEQDLLSQTKRHHESQLRSLKELLKWLRRVLPVDSNKITGRNYQFTLSKRKELKVEITTDPEFWHTDERSKFCINQETTVIKQIVVRSLSGDILSQRTEPKTKHEILPNLDAIRDAYQAGQHLPHGVKVTQDYAILRKRIVSNDLDLDASEHYGELLPEAGATNESD*
Ga0079957_100103635	F022857	N/A	MEPIAVPKLTVSFAVDLELDYNSFGGKTADEIADALQDELDDLLFEASPNVVGVYTSTTAINFND*
Ga0079957_10010367	F003601	AGG	MTDYTDEQLLAMAMANIGDFIHDNSPHYILVDEDPRNEDDYDTWEYGTEPLPQDHTWHSASIDVEVSPSEPE*