Scaffold Ga0079957_1000904

Overview

Basic Information

• Taxon OID: 3300005805
• Scaffold ID: Ga0079957_1000904
• Source Dataset Name: Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27154
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (73.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location

• Location Name: Wichita, Kansas, USA
• Coordinates
  • Lat. (^o): 37.7330997
  • Long. (^o): -97.7990663

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020324	Metagenome	224	Y
F034165	Metagenome / Metatranscriptome	175	Y
F074829	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_100090413	F020324	GGCGG	MPVATLRFTLPDEDAEHRAAIQGSEAKSTLWHIDQRCRSLLKHGDPTPAERALAEEIRGLIPHELLED*
Ga0079957_100090421	F034165	AGGAG	MPTVTLGKDVTIGGVNNARSCTVTNSAAEIDVTKFGDTSRRFRKALIEQTCELECVDDPGVDAGDTFTLTGTDTGASVDYVVTSVAKSDPIDGISTYTVSATRTEQT*
Ga0079957_10009043	F074829	GGAG	MSTPLILFVGVIYLWVAADQAWKGSPMAIAWFGYALANVGLALAAK*