Scaffold Ga0079957

Basic Information
Taxon OID	3300005805 Open in IMG/M
Scaffold ID	Ga0079957_1000031 Open in IMG/M
Source Dataset Name	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005805 Open in IMG/M

Scaffold ID

Ga0079957_1000031 Open in IMG/M

Source Dataset Name

Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	95427
Total Scaffold Genes	146 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	97 (66.44%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

95427

Total Scaffold Genes

146 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

97 (66.44%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake → Microbial And Algae Communities From Cheney Reservoir In Wichita, Kansas, Usa

Source Dataset Sampling Location
Location Name	Wichita, Kansas, USA
Coordinates	Lat. (^o)	37.7330997	Long. (^o)	-97.7990663	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Wichita, Kansas, USA

Coordinates

Lat. (^o)

37.7330997

Long. (^o)

-97.7990663

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008244	Metagenome / Metatranscriptome	336	Y
F019833	Metagenome	227	Y
F024790	Metagenome / Metatranscriptome	204	Y
F035769	Metagenome / Metatranscriptome	171	Y
F061850	Metagenome	131	Y
F092068	Metagenome	107	N
F093853	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079957_10000311	F024790	AGG	MINWLRTKLHNFIFPQDTNELVETKTDRASRGLISRGSQLDSRNGMSFTIHQANGGYVMEYSSYDEKTDRNSHNLHIITSEQDLGQGIAHIITLELLRK*
Ga0079957_100003110	F061850	N/A	MGLLKLADDNPDIDFYDYRDQHYYNKYEYRARFVLVGVRYTWYIKDDIQELIDRLDAPAVGYNRVVNDRDKVRGNLQILASFLKWRNELKKKKNSSIRIEHNTVGVFSNDLQELKDIVNCIPGIEVDYTQAQISNFIGIKHFVNKPKHKFRVYLKSKRVESSFAEELDSLFKKNEKLYPCDSLKIWVKGSVGQQNSWRFRFSNANHFIDYDDESTLSYLALLYGDMLGKRYKLEKRPDPI
Ga0079957_100003130	F093853	AGGAG	MPYRSRIKTLEESYRLVENQLFQLEKAGNADPKKIASLREASSKYMTELRQMNRAQWDHDHETVDLDDDR*
Ga0079957_100003153	F019833	AGG	MYELRYFVRPGWDGPEKVLQYRTQFEVSDYSSPNENGKYISVKKWTEWQDVPTVEDK*
Ga0079957_100003177	F092068	AGG	MTEEKKSSNPFINMANEAKKKNAPMITGKKSEQKAPKPSKGFGGASVVRRTGRGG*
Ga0079957_100003180	F008244	AGG	VKLGVLHKNPIFKHTHRRYKMFNTATYAFIDGVSDFKKKFVEQTVQHEGIKNAMNSFVDAQAKYTKSAADAGMQSMMALGMIFSSKDFYTQLADQYKAMVPAFNTNKTKAK*
Ga0079957_100003181	F035769	AGG	MKLLGMLIAFLGFSTDTYGTELEKYIVGQNPQNAGDIERLTYEFHRKQSDWRFL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079957_1000031

Overview

Ecosystem & Geography

Associated Families

Sequences