Scaffold Ga0079955_106852

Overview

Basic Information

• Taxon OID: 3300005804
• Scaffold ID: Ga0079955_106852
• Source Dataset Name: Freshwater sediment microbial communities from Rio Mameyes, Puerto Rico - dichloromethane (DCM) enrichment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Tennessee
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3672
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Degradation Of Dichloromethane (Dcm)

Source Dataset Sampling Location

• Location Name: Puerto Rico
• Coordinates
  • Lat. (^o): 18.21439
  • Long. (^o): -65.461

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020363	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079955_1068525	F020363	AGGAG	LAVTFGGMGLLPCVAVARVFALVVRCRVMMLFVYCRVGKNRDTKRESPAGAGAGRTADHLTVLFSQKVLAVRKGNDYTDLLATVLLLN*