3300005804: Freshwater sediment microbial communities from Rio Mameyes, Puerto Rico - dichloromethane (DCM) enrichment

Overview

Basic Information

• IMG/M Taxon OID: 3300005804
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116288 | Gp0120357 | Ga0079955
• Sample Name: Freshwater sediment microbial communities from Rio Mameyes, Puerto Rico - dichloromethane (DCM) enrichment
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 142442212
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Degradation Of Dichloromethane (Dcm)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Degradation Of Dichloromethane (Dcm)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → bayou → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Sediment (non-saline)

Location Information

• Location: Puerto Rico
• Coordinates
  • Lat. (^o): 18.21439
  • Long. (^o): -65.461
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015621	Metagenome / Metatranscriptome	253	Y
F020363	Metagenome / Metatranscriptome	224	Y
F024131	Metagenome	207	Y
F059711	Metagenome	133	Y
F081380	Metagenome / Metatranscriptome	114	Y
F090061	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0079955_101032	Not Available	16913
Ga0079955_101514	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12158
Ga0079955_106852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	3672
Ga0079955_114938	All Organisms → cellular organisms → Bacteria	1899
Ga0079955_114966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1897
Ga0079955_123763	All Organisms → cellular organisms → Bacteria	974
Ga0079955_126195	Not Available	798

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079955_101032	Ga0079955_1010329	F081380	MATAMRKASEYLDLPDGKLIWFYEFRPHFNKLVLDPIKNFQFKMDDMLIGFVFMSCCIDYLSGFWWGEDRELGMARQAYVGFINEYFRPRGAYNAKGIYDSLRNGLVHLFTIKNKMYELTFEEPERHLTVSHNSYIVLNASNFRDDLIEAANRYFDAVEKSPQLLDKAFQRYERDGFIQWID*
Ga0079955_101514	Ga0079955_10151410	F020363	MWRWRRVAMARVFALVVRCSDMKLFVYCRVGKNRDTRRESPAGAGPGRTADHLTILFSQEVLAVRSANDIYRPVSTSY*
Ga0079955_106852	Ga0079955_1068525	F020363	LAVTFGGMGLLPCVAVARVFALVVRCRVMMLFVYCRVGKNRDTKRESPAGAGAGRTADHLTVLFSQKVLAVRKGNDYTDLLATVLLLN*
Ga0079955_114938	Ga0079955_1149382	F059711	MRNRTFHTSINLLIEPGTYQRLKMIAGLQKTTMSKFIREGIKLRLTQYDKENNSVVEG*
Ga0079955_114966	Ga0079955_1149665	F090061	MDSQDILRELNKTLIKYRAGLISIEQCRQEVSILATMLKAYEDTVMEEKMSRIQAVLEGRS*
Ga0079955_123763	Ga0079955_1237633	F015621	MSLAELKENVLALPASERHEFVTWMNRLEADYGDVPGEALDQLAAEIWDQDDRHAPPTHPTR*
Ga0079955_126195	Ga0079955_1261951	F024131	MEIPQEGKYVCKLNGQLVIYEASTGSLCAAIPCVVAAPPAYEGFAFKHTLVLVKADGTIQTKTTDTLKVVFGWDGADPFWLMDNSLDGGAMREIEFEIVGGPETGDKGGQYFKSQWLNPLGGGLKTPAAADRRSVLAKYGSKFAALAGVAANAANGGSRKVEGGGQVAREDARSTVLPVTRPPTATRASQPPT