Scaffold Ga0079955_101032

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0079955_101032

Scaffold Ga0079955_101032

Overview

Basic Information
Taxon OID	3300005804 Open in IMG/M
Scaffold ID	Ga0079955_101032 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Rio Mameyes, Puerto Rico - dichloromethane (DCM) enrichment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16913
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Degradation Of Dichloromethane (Dcm)

Source Dataset Sampling Location
Location Name	Puerto Rico
Coordinates	Lat. (^o)	18.21439	Long. (^o)	-65.461	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081380	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079955_1010329	F081380	AGGCGG	MATAMRKASEYLDLPDGKLIWFYEFRPHFNKLVLDPIKNFQFKMDDMLIGFVFMSCCIDYLSGFWWGEDRELGMARQAYVGFINEYFRPRGAYNAKGIYDSLRNGLVHLFTIKNKMYELTFEEPERHLTVSHNSYIVLNASNFRDDLIEAANRYFDAVEKSPQLLDKAFQRYERDGFIQWID*

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