NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079639_1014399

Scaffold Ga0079639_1014399


Overview

Basic Information
Taxon OID3300005800 Open in IMG/M
Scaffold IDGa0079639_1014399 Open in IMG/M
Source Dataset NameSediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2097
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Thermal Hot Spring → Sediment Microbial Communities Of Hot Springs In Rotorua, New Zealand

Source Dataset Sampling Location
Location NameRotorua, NZ
CoordinatesLat. (o)-38.0631325Long. (o)176.360798Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020112Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0079639_10143991F020112AGGAGGVTGVSKAFKKCVELVEEMLSKGYTLQIPSTEVERLIKMGVGADKRTVQKYMRMLTEDLAFLKTVAKNPLGIIIYRIDVEAIEQFVNEHLKEKLRQVKLSDIRLEQENMRQVGT*

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