Scaffold Ga0079639_1002579

Overview

Basic Information

• Taxon OID: 3300005800
• Scaffold ID: Ga0079639_1002579
• Source Dataset Name: Sediment microbial communities of hot springs in Rotorua, New Zealand ? Tikitere hot spring, NZ13
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oak Ridge National Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5940
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Thermal Hot Spring → Sediment Microbial Communities Of Hot Springs In Rotorua, New Zealand

Source Dataset Sampling Location

• Location Name: Rotorua, NZ
• Coordinates
  • Lat. (^o): -38.0631325
  • Long. (^o): 176.360798

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025877	Metagenome	200	Y
F051554	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079639_10025791	F051554	AGG	MGMQLRYYVPFKAQEGVNAEYAIKEKLINIEGVAIDTSVNANKWQVPSADLDYIVETLKGAQLRVDHAESALMVVGKVVDAWRDGDRVLFRAEVGDEKLIEKILRGYITHVSIQVDSDEVECSKCKRPSRKEGMLIHLCPGAWEVVHKPKVRELSIVASPAYKTTEFQPVGFFAAMNENQWDAILKHVVGSQLPDSHGNNVGSR
Ga0079639_10025793	F025877	GAGG	MPGLDEGVTVWRYRVQDPDKFEKFRVKEITEGVKITLGKVKNSDRWEIQNYMFDKKRFKTREQVLNWLEKHLKSEVKTLLDFKAWNEARKRFLQVWLEISRISA*