NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078433_106070

Scaffold Ga0078433_106070


Overview

Basic Information
Taxon OID3300005786 Open in IMG/M
Scaffold IDGa0078433_106070 Open in IMG/M
Source Dataset NameDeep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten I
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCenter for Biotechnology (CeBiTec), Bielefeld Univeristy
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)851
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Source Dataset Sampling Location
Location NameFram Strait
CoordinatesLat. (o)78.153207Long. (o)5.975413Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013764Metagenome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0078433_1060702F013764GAGMIQTPSFFFFRTNSKNPNSSGLPPYSKRALVAVVVAIPMAFGLNVPLNSMVSFIPIWGVIMINAIVIPTYMTFIIPRASKLLSSWLSPTITNSNGVN*

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