Sample 3300005786

Overview

Basic Information
IMG/M Taxon OID	3300005786 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114881 \| Gp0119454 \| Ga0078433
Sample Name	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten I
Sequencing Status	Permanent Draft
Sequencing Center	Center for Biotechnology (CeBiTec), Bielefeld Univeristy
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	16587219
Sequencing Scaffolds	18
Novel Protein Genes	18
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep-Sea Sediment Bacterial And Archaeal Communities
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → deep marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Fram Strait
Coordinates	Lat. (^o)	78.153207	Long. (^o)	5.975413	Alt. (m)	N/A	Depth (m)	1200
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F005817	Metagenome / Metatranscriptome	389	N
F013764	Metagenome	268	Y
F029446	Metagenome / Metatranscriptome	188	Y
F037294	Metagenome / Metatranscriptome	168	Y
F037739	Metagenome / Metatranscriptome	167	Y
F045107	Metagenome	153	Y
F052198	Metagenome	143	Y
F074900	Metagenome	119	Y
F077325	Metagenome	117	Y
F093896	Metagenome / Metatranscriptome	106	Y
F093897	Metagenome	106	Y
F099818	Metagenome / Metatranscriptome	103	Y
F103292	Metagenome	101	Y
F105217	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F005817

Metagenome / Metatranscriptome

389

F013764

Metagenome

268

F029446

Metagenome / Metatranscriptome

188

F037294

Metagenome / Metatranscriptome

168

F037739

Metagenome / Metatranscriptome

167

F045107

Metagenome

153

F052198

Metagenome

143

F074900

Metagenome

119

F077325

Metagenome

117

F093896

Metagenome / Metatranscriptome

106

F093897

Metagenome

106

F099818

Metagenome / Metatranscriptome

103

F103292

Metagenome

101

F105217

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0078433_100003	Not Available	8637	Open in IMG/M
Ga0078433_100120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2953	Open in IMG/M
Ga0078433_100144	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis	2821	Open in IMG/M
Ga0078433_100169	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2710	Open in IMG/M
Ga0078433_100586	All Organisms → cellular organisms → Bacteria	1864	Open in IMG/M
Ga0078433_100697	All Organisms → cellular organisms → Archaea	1792	Open in IMG/M
Ga0078433_101588	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1373	Open in IMG/M
Ga0078433_102094	Not Available	1258	Open in IMG/M
Ga0078433_102376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1206	Open in IMG/M
Ga0078433_103604	Not Available	1040	Open in IMG/M
Ga0078433_104197	Not Available	982	Open in IMG/M
Ga0078433_105971	Not Available	857	Open in IMG/M
Ga0078433_106070	All Organisms → cellular organisms → Archaea	851	Open in IMG/M
Ga0078433_108208	All Organisms → cellular organisms → Archaea	752	Open in IMG/M
Ga0078433_108508	Not Available	740	Open in IMG/M
Ga0078433_110217	Not Available	682	Open in IMG/M
Ga0078433_112564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	621	Open in IMG/M
Ga0078433_113814	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	592	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0078433_100003

Not Available

8637

Open in IMG/M

Ga0078433_100120

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

2953

Open in IMG/M

Ga0078433_100144

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus koreensis

2821

Open in IMG/M

Ga0078433_100169

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

2710

Open in IMG/M

Ga0078433_100586

All Organisms → cellular organisms → Bacteria

1864

Open in IMG/M

Ga0078433_100697

All Organisms → cellular organisms → Archaea

1792

Open in IMG/M

Ga0078433_101588

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon

1373

Open in IMG/M

Ga0078433_102094

Not Available

1258

Open in IMG/M

Ga0078433_102376

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium

1206

Open in IMG/M

Ga0078433_103604

Not Available

1040

Open in IMG/M

Ga0078433_104197

Not Available

982

Open in IMG/M

Ga0078433_105971

Not Available

857

Open in IMG/M

Ga0078433_106070

All Organisms → cellular organisms → Archaea

851

Open in IMG/M

Ga0078433_108208

All Organisms → cellular organisms → Archaea

752

Open in IMG/M

Ga0078433_108508

Not Available

740

Open in IMG/M

Ga0078433_110217

Not Available

682

Open in IMG/M

Ga0078433_112564

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei

621

Open in IMG/M

Ga0078433_113814

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon

592

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0078433_100003	Ga0078433_10000312	F005817	MRSDLLSRLKPEFKQGLEDNKTRYPASIDDLEFVLGQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*
Ga0078433_100120	Ga0078433_1001207	F037739	MSKQIPKGTDVDGDMTNALDSRFLNSIVLRGALAKSGKDHLIVTVDRVEFHKILKYENGQTNPDVYLMYFVGSDKPLKLAKTNIKRIINIHGTLGKGWHGKKLALHIEQDRRPDLGGKGPCVRVKNIDPATGLAPAAW*
Ga0078433_100144	Ga0078433_1001443	F077325	MSRKGNWTEKDEATIKAIVVNMINQKQMFRDLGEIGELHDSFDVKNSKEYVLGLFTGIVINLFANYWVGEHEAGLLPEDWAYLYHKIALFHDMIVEGLFE*
Ga0078433_100169	Ga0078433_1001694	F105217	MESGLNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISAEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIIHALEAKHTDEDMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEIL
Ga0078433_100586	Ga0078433_1005862	F029446	MLILFILVTGIVVGILPGLLKLDKMFSITNIVVGFVGALVGAFLGFGDAPLFLKYPFLNEITLMVAGSFLFVFIKISFTRKRIVP*
Ga0078433_100697	Ga0078433_1006972	F013764	MSTSSFLFFRTNSKKSNLSVLPPYSKRALVAIIVAIPMAFGLNVPLNSMASFMPVWGVIMINAIVIPSYMTFIIPKASKLLSSWLTSTQANGVN*
Ga0078433_101588	Ga0078433_1015884	F093897	VKLGFYISMGVAIAGLVVGFILLNDIQQEKESQLVWMQKIPTQCNDVWSEEYNEFYKINPEMREFSKEESKEILENIIKSHYEKQGINVVDLNLQFDVYEGMRCQACNCLGWDKLSIEIPEKQLELIPENEGWEPKS*
Ga0078433_102094	Ga0078433_1020943	F037294	MSTTKKKKFYWNEDTLNHFKFNSSYQNKKQTIEEITLFVENECSLEDNETEEMLINDLINQVYNTN*
Ga0078433_102376	Ga0078433_1023761	F103292	MILRWRFETQLPYGRFVAVVSEDGDGFSAEIEGKIVASPRTEDARIRDQKITDQYYGPKSVRAHSLEALRRTVDEKIENDIGPVNKWTAD
Ga0078433_103604	Ga0078433_1036041	F093896	LVSLDHMEEHLFIIYEAGDITQDTFNLRMNTWKTAYKKIAKINDYE*
Ga0078433_104197	Ga0078433_1041972	F074900	MAVKIVNLANPDEGETLCASVEDAAQALAAMVERFKSQGYRIAEQHLADADYPQYAIYDHADAWIGTYTIILQ*
Ga0078433_105971	Ga0078433_1059714	F052198	MNKEQLEDKVNELELTLNSLELNAKVVKDDLKKVETQLKNVNKPRLYPSQLDDIRNAIEEVFNQSSFNDVESYDVDFEIDYNNSLALGSIEFNDADNVAEAISDAIEDLFNVIPADED*
Ga0078433_106070	Ga0078433_1060702	F013764	MIQTPSFFFFRTNSKNPNSSGLPPYSKRALVAVVVAIPMAFGLNVPLNSMVSFIPIWGVIMINAIVIPTYMTFIIPRASKLLSSWLSPTITNSNGVN*
Ga0078433_108208	Ga0078433_1082081	F105217	MESGLNTNKERNLLIDSIQYRIFYAEINLDKIPTSIPLDIFPNDKISTEISIDGFLFYANGALDLIFAEINKKLHLELTPNQIHPSDIIKALDTKNTDEAKAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRHQVKYQHFWNRVSSRLWEIRNQQNLESYDSLLKNAGKQAKDKPRNYLRVKIADDDHPSVFWDSAHYDNPKRYFTNILS
Ga0078433_108508	Ga0078433_1085082	F045107	MGPPIPTMAELLRFAEEAKAQRKATAEKLLTDRAMTREELIKIGLLSDKYVN*
Ga0078433_110217	Ga0078433_1102171	F045107	MGPPIPTLAELSRFASSVRAKRKETAEKLLTGHVMTREELIKHGLLSENDVH*
Ga0078433_112564	Ga0078433_1125641	F099818	EGSVMGLERRVQVIAVELGPTGHAGRSPMVQRKAAAFV*
Ga0078433_113814	Ga0078433_1138141	F093897	MGVAIAGLVVGFILLNDIQQEKESQLVWMQKIPTQCNDVWSEEYNEFYKINPEMRESSKEILEDVIKSHYEKQGINISDINLELDVYEGIRCEACSCLGWDRLSIKIPENQLELIPESEGWEPVS*

Scaffold ID

Protein ID

Family

Sequence

Ga0078433_100003

Ga0078433_10000312

F005817

MRSDLLSRLKPEFKQGLEDNKTRYPASIDDLEFVLGQITFYNDLTVNQVLNLFLFSDMQYLDRKNFDWRYGEDAFELENNVA*

Ga0078433_100120

Ga0078433_1001207

F037739

MSKQIPKGTDVDGDMTNALDSRFLNSIVLRGALAKSGKDHLIVTVDRVEFHKILKYENGQTNPDVYLMYFVGSDKPLKLAKTNIKRIINIHGTLGKGWHGKKLALHIEQDRRPDLGGKGPCVRVKNIDPATGLAPAAW*

Ga0078433_100144

Ga0078433_1001443

F077325

MSRKGNWTEKDEATIKAIVVNMINQKQMFRDLGEIGELHDSFDVKNSKEYVLGLFTGIVINLFANYWVGEHEAGLLPEDWAYLYHKIALFHDMIVEGLFE*

Ga0078433_100169

Ga0078433_1001694

F105217

MESGLNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISAEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIIHALEAKHTDEDMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEIL

Ga0078433_100586

Ga0078433_1005862

F029446

MLILFILVTGIVVGILPGLLKLDKMFSITNIVVGFVGALVGAFLGFGDAPLFLKYPFLNEITLMVAGSFLFVFIKISFTRKRIVP*

Ga0078433_100697

Ga0078433_1006972

F013764

MSTSSFLFFRTNSKKSNLSVLPPYSKRALVAIIVAIPMAFGLNVPLNSMASFMPVWGVIMINAIVIPSYMTFIIPKASKLLSSWLTSTQANGVN*

Ga0078433_101588

Ga0078433_1015884

F093897

VKLGFYISMGVAIAGLVVGFILLNDIQQEKESQLVWMQKIPTQCNDVWSEEYNEFYKINPEMREFSKEESKEILENIIKSHYEKQGINVVDLNLQFDVYEGMRCQACNCLGWDKLSIEIPEKQLELIPENEGWEPKS*

Ga0078433_102094

Ga0078433_1020943

F037294

MSTTKKKKFYWNEDTLNHFKFNSSYQNKKQTIEEITLFVENECSLEDNETEEMLINDLINQVYNTN*

Ga0078433_102376

Ga0078433_1023761

F103292

MILRWRFETQLPYGRFVAVVSEDGDGFSAEIEGKIVASPRTEDARIRDQKITDQYYGPKSVRAHSLEALRRTVDEKIENDIGPVNKWTAD

Ga0078433_103604

Ga0078433_1036041

F093896

LVSLDHMEEHLFIIYEAGDITQDTFNLRMNTWKTAYKKIAKINDYE*

Ga0078433_104197

Ga0078433_1041972

F074900

MAVKIVNLANPDEGETLCASVEDAAQALAAMVERFKSQGYRIAEQHLADADYPQYAIYDHADAWIGTYTIILQ*

Ga0078433_105971

Ga0078433_1059714

F052198

MNKEQLEDKVNELELTLNSLELNAKVVKDDLKKVETQLKNVNKPRLYPSQLDDIRNAIEEVFNQSSFNDVESYDVDFEIDYNNSLALGSIEFNDADNVAEAISDAIEDLFNVIPADED*

Ga0078433_106070

Ga0078433_1060702

F013764

MIQTPSFFFFRTNSKNPNSSGLPPYSKRALVAVVVAIPMAFGLNVPLNSMVSFIPIWGVIMINAIVIPTYMTFIIPRASKLLSSWLSPTITNSNGVN*

Ga0078433_108208

Ga0078433_1082081

F105217

MESGLNTNKERNLLIDSIQYRIFYAEINLDKIPTSIPLDIFPNDKISTEISIDGFLFYANGALDLIFAEINKKLHLELTPNQIHPSDIIKALDTKNTDEAKAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYENRHQVKYQHFWNRVSSRLWEIRNQQNLESYDSLLKNAGKQAKDKPRNYLRVKIADDDHPSVFWDSAHYDNPKRYFTNILS

Ga0078433_108508

Ga0078433_1085082

F045107

MGPPIPTMAELLRFAEEAKAQRKATAEKLLTDRAMTREELIKIGLLSDKYVN*

Ga0078433_110217

Ga0078433_1102171

F045107

MGPPIPTLAELSRFASSVRAKRKETAEKLLTGHVMTREELIKHGLLSENDVH*

Ga0078433_112564

Ga0078433_1125641

F099818

EGSVMGLERRVQVIAVELGPTGHAGRSPMVQRKAAAFV*

Ga0078433_113814

Ga0078433_1138141

F093897

MGVAIAGLVVGFILLNDIQQEKESQLVWMQKIPTQCNDVWSEEYNEFYKINPEMRESSKEILEDVIKSHYEKQGINISDINLELDVYEGIRCEACSCLGWDRLSIKIPENQLELIPESEGWEPVS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005786: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten I

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences