Scaffold Ga0066903_101185688

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_101185688
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1416
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000257	Metagenome / Metatranscriptome	1447	Y
F000792	Metagenome / Metatranscriptome	890	Y
F002887	Metagenome / Metatranscriptome	523	Y
F086013	Metagenome	111	Y
F100851	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1011856881	F100851	N/A	CELNTIKRQGAAWLASFGCSGAGLTWVEDDEIRIGKDGWTLAAKIKNVRRVGDPIHYCLSNKC*
Ga0066903_1011856882	F000257	AGGAGG	MTRRKREIIGFRNERDFPHVVELALPLGPFRSVFLEIDAFHRERHIPVRRGRSRHEVKQVYIRFCFPDAATADAFRNRFGGECLIHDLAKSRDGGDPAFQNGTSVMKCRIS*
Ga0066903_1011856884	F002887	GAGG	MAPKPARFVFAVGVALTILAVATWAMAEPSPSIYPIYQPQLPVLY*
Ga0066903_1011856885	F000792	N/A	MREQVLLFCLLGLVLTATIILVTAPGAVTWALALIE*
Ga0066903_1011856886	F086013	GAG	MQIDQTLFATLYLLGFNFLGGDLFSGEIAEIKGDMTIK