NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100699510

Scaffold Ga0066903_100699510


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100699510 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1786
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002604Metagenome / Metatranscriptome544Y
F003919Metagenome / Metatranscriptome462Y
F058493Metagenome135Y
F084547Metagenome / Metatranscriptome112N
F098244Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1006995101F058493GAGMTKPKTRVDLALTLDADWPTRQPITLTDLVAEARALDWDFTNWCCASGHDASDPDAR
Ga0066903_1006995102F003919AGAAGGMKLVPPDTCVKDYKKRRSAFLEELIASTPNVSVRAEEFRRWIDENSPQSDNDEA*
Ga0066903_1006995103F098244GGAGMLTSNDYKELAARCTELASESPEPTVAEALRALASDYLARAAKLHYQTAD*
Ga0066903_1006995104F002604GGAMLGKLSIIGAVAAILMIPTALSAQMAGAINPGVHVGGTVNPGATVRGAVERGIPRPDLGTWRAPSGAVHRSRKHTATKQRR*
Ga0066903_1006995105F084547N/ALLTVAAFETLVGGLIDLAGVPDLDIINARLFIHPFLAIAALVLAARRYLRAAIVVLAAYILTALAIGWSLDFALGGLSLLAQQVIFGPLAVTAIVLAMLNKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*

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