NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098244

Metagenome / Metatranscriptome Family F098244

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098244
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 47 residues
Representative Sequence MLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Number of Associated Samples 71
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 76.47 %
% of genes near scaffold ends (potentially truncated) 59.62 %
% of genes from short scaffolds (< 2000 bps) 88.46 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction Yes
3D model pTM-score0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (65.385 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil
(19.231 % of family members)
Environment Ontology (ENVO) Unclassified
(38.462 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(64.423 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.13%    β-sheet: 0.00%    Coil/Unstructured: 44.87%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.76
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.24.16.0: automated matchesd1wola_1wol0.9185
a.25.1.1: Ferritind3pwfa13pwf0.90565
f.14.1.4: TRPM-like (melastatin-like transient receptor potential) channelsd6bcoa26bco0.90457
a.25.1.1: Ferritind4iwka_4iwk0.90384
a.25.1.1: Ferritind1j30a_1j300.89931


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF13460NAD_binding_10 1.92
PF08281Sigma70_r4_2 1.92
PF12833HTH_18 1.92
PF04542Sigma70_r2 1.92
PF13531SBP_bac_11 0.96
PF00027cNMP_binding 0.96
PF01381HTH_3 0.96
PF00196GerE 0.96
PF04392ABC_sub_bind 0.96
PF01068DNA_ligase_A_M 0.96
PF03404Mo-co_dimer 0.96
PF01370Epimerase 0.96
PF12625Arabinose_bd 0.96
PF05425CopD 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.92
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 1.92
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 1.92
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 1.92
COG1276Putative copper export proteinInorganic ion transport and metabolism [P] 0.96
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.96
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.96
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.38 %
All OrganismsrootAll Organisms34.62 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908045|KansclcFeb2_ConsensusfromContig886647Not Available565Open in IMG/M
3300000580|AF_2010_repII_A01DRAFT_1013040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1337Open in IMG/M
3300000655|AF_2010_repII_A100DRAFT_1021408All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1216Open in IMG/M
3300000789|JGI1027J11758_12764447Not Available826Open in IMG/M
3300001431|F14TB_102574917Not Available662Open in IMG/M
3300004081|Ga0063454_101176337Not Available632Open in IMG/M
3300005332|Ga0066388_100027103All Organisms → cellular organisms → Bacteria5254Open in IMG/M
3300005332|Ga0066388_100297867All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2257Open in IMG/M
3300005332|Ga0066388_101198789Not Available1297Open in IMG/M
3300005332|Ga0066388_103584665Not Available792Open in IMG/M
3300005332|Ga0066388_104404359Not Available717Open in IMG/M
3300005332|Ga0066388_104442519Not Available714Open in IMG/M
3300005332|Ga0066388_104489506Not Available711Open in IMG/M
3300005332|Ga0066388_105871286Not Available620Open in IMG/M
3300005363|Ga0008090_10047463All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300005363|Ga0008090_15836722Not Available720Open in IMG/M
3300005435|Ga0070714_100462872All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1206Open in IMG/M
3300005436|Ga0070713_100536403All Organisms → cellular organisms → Bacteria1107Open in IMG/M
3300005451|Ga0066681_10582742Not Available690Open in IMG/M
3300005713|Ga0066905_100186080All Organisms → cellular organisms → Bacteria → Proteobacteria1537Open in IMG/M
3300005713|Ga0066905_100391166Not Available1124Open in IMG/M
3300005713|Ga0066905_102325203Not Available501Open in IMG/M
3300005764|Ga0066903_100699510All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1786Open in IMG/M
3300005764|Ga0066903_101393635Not Available1316Open in IMG/M
3300005764|Ga0066903_102004856Not Available1112Open in IMG/M
3300005764|Ga0066903_102354875Not Available1029Open in IMG/M
3300005764|Ga0066903_103893148Not Available801Open in IMG/M
3300005764|Ga0066903_104959379Not Available706Open in IMG/M
3300005764|Ga0066903_106989444Not Available585Open in IMG/M
3300005764|Ga0066903_108500347Not Available523Open in IMG/M
3300005764|Ga0066903_108525419Not Available522Open in IMG/M
3300005937|Ga0081455_10121463All Organisms → cellular organisms → Bacteria2058Open in IMG/M
3300005981|Ga0081538_10012292All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae6872Open in IMG/M
3300006028|Ga0070717_11480409Not Available616Open in IMG/M
3300006051|Ga0075364_10820645Not Available634Open in IMG/M
3300006844|Ga0075428_100935661Not Available919Open in IMG/M
3300009100|Ga0075418_10214760Not Available2048Open in IMG/M
3300009100|Ga0075418_11312289Not Available785Open in IMG/M
3300009100|Ga0075418_11808137Not Available665Open in IMG/M
3300009137|Ga0066709_101991165Not Available805Open in IMG/M
3300009792|Ga0126374_10801611All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia720Open in IMG/M
3300010043|Ga0126380_10141614All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1524Open in IMG/M
3300010043|Ga0126380_10166374Not Available1434Open in IMG/M
3300010043|Ga0126380_10884514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria740Open in IMG/M
3300010046|Ga0126384_11788069Not Available583Open in IMG/M
3300010047|Ga0126382_12026381Not Available548Open in IMG/M
3300010361|Ga0126378_11096602All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria897Open in IMG/M
3300010366|Ga0126379_12076856Not Available670Open in IMG/M
3300010366|Ga0126379_12232199Not Available648Open in IMG/M
3300010366|Ga0126379_13152892All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium552Open in IMG/M
3300015371|Ga0132258_12070129All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1431Open in IMG/M
3300015372|Ga0132256_101045878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium931Open in IMG/M
3300015373|Ga0132257_100133841All Organisms → cellular organisms → Bacteria2891Open in IMG/M
3300016319|Ga0182033_11297025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium654Open in IMG/M
3300016341|Ga0182035_11135017All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium696Open in IMG/M
3300016357|Ga0182032_10818693Not Available788Open in IMG/M
3300016387|Ga0182040_11205945Not Available637Open in IMG/M
3300016422|Ga0182039_10078629Not Available2362Open in IMG/M
3300016422|Ga0182039_10993283Not Available752Open in IMG/M
3300016445|Ga0182038_10474636All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1063Open in IMG/M
3300019767|Ga0190267_11162162Not Available561Open in IMG/M
3300021080|Ga0210382_10425135Not Available588Open in IMG/M
3300021170|Ga0210400_11546791Not Available525Open in IMG/M
3300021560|Ga0126371_11428734All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium822Open in IMG/M
3300021560|Ga0126371_11961321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium704Open in IMG/M
3300021560|Ga0126371_12261401All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium657Open in IMG/M
3300027663|Ga0208990_1112290Not Available747Open in IMG/M
3300027909|Ga0209382_11048378All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium846Open in IMG/M
3300028787|Ga0307323_10329607Not Available547Open in IMG/M
3300028793|Ga0307299_10311170Not Available591Open in IMG/M
3300028819|Ga0307296_10157550All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1228Open in IMG/M
3300031545|Ga0318541_10009784All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4269Open in IMG/M
3300031573|Ga0310915_10513331Not Available851Open in IMG/M
3300031679|Ga0318561_10633553Not Available588Open in IMG/M
3300031682|Ga0318560_10532705Not Available636Open in IMG/M
3300031719|Ga0306917_11006859Not Available650Open in IMG/M
3300031724|Ga0318500_10392149Not Available689Open in IMG/M
3300031744|Ga0306918_10596724All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium865Open in IMG/M
3300031763|Ga0318537_10073741Not Available1252Open in IMG/M
3300031764|Ga0318535_10271155All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium759Open in IMG/M
3300031771|Ga0318546_10555766Not Available806Open in IMG/M
3300031896|Ga0318551_10168395Not Available1202Open in IMG/M
3300031910|Ga0306923_10385750All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1595Open in IMG/M
3300031910|Ga0306923_10410675All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1539Open in IMG/M
3300031910|Ga0306923_10942397All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium942Open in IMG/M
3300031941|Ga0310912_11440991Not Available519Open in IMG/M
3300031945|Ga0310913_10011310Not Available5346Open in IMG/M
3300031945|Ga0310913_10143749Not Available1644Open in IMG/M
3300031947|Ga0310909_10906931Not Available723Open in IMG/M
3300031954|Ga0306926_11593826Not Available749Open in IMG/M
3300032001|Ga0306922_12215037Not Available529Open in IMG/M
3300032041|Ga0318549_10072974Not Available1459Open in IMG/M
3300032051|Ga0318532_10057593All Organisms → cellular organisms → Bacteria1340Open in IMG/M
3300032060|Ga0318505_10372984Not Available674Open in IMG/M
3300032076|Ga0306924_10233718All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2111Open in IMG/M
3300032090|Ga0318518_10436135Not Available671Open in IMG/M
3300032180|Ga0307471_101863403Not Available752Open in IMG/M
3300032261|Ga0306920_102245766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium757Open in IMG/M
3300032261|Ga0306920_102673780Not Available682Open in IMG/M
3300032261|Ga0306920_103196201Not Available613Open in IMG/M
3300033289|Ga0310914_10448884Not Available1167Open in IMG/M
3300033551|Ga0247830_10980160Not Available674Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil19.23%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil19.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.31%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil13.46%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.88%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.92%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.92%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil1.92%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.96%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.96%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.96%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.96%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere0.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908045Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011EnvironmentalOpen in IMG/M
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006051Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300019767Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 TEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300027663Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028787Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KansclcFeb2_099920202124908045SoilMLTWDDYRELAARCIELADESSEPSVAEALRALAADYLTRGDKLYSEAAE
AF_2010_repII_A01DRAFT_101304053300000580Forest SoilMLTSNDYKELAARCAELASESSEPTMAEALRALASDYL
AF_2010_repII_A100DRAFT_102140843300000655Forest SoilAMLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHHQTAD*
JGI1027J11758_1276444723300000789SoilMLTWDDYRELAARCIELADESSEPSVAAALRALAADYLARGAKLYS*
F14TB_10257491723300001431SoilMLTSNDYKELAARCTELASESSEPTVAEALMALASDYLARAAKLHRQTAD*
Ga0063454_10117633713300004081SoilMLIADDYRELAARCIELAGESSEPSVAEALRALAADYLARGGKLYREAAE*
Ga0066388_10002710313300005332Tropical Forest SoilMLTSNDYKELAARCIELASESSEPTVAEALMTLASDYLARAAKLHRQTAN*
Ga0066388_10029786713300005332Tropical Forest SoilDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD*
Ga0066388_10119878923300005332Tropical Forest SoilMLTSNDYKELAARCTELASECSEPTVAEPLRALALDYLARAAKLHYQTAD*
Ga0066388_10358466513300005332Tropical Forest SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLTRAAKLHHQTAD*
Ga0066388_10440435923300005332Tropical Forest SoilMLTSNDYKELAARCTELASEFPEPTVAEALMALASDYLARAAKLHH*
Ga0066388_10444251913300005332Tropical Forest SoilMLTSNDYKELAARCAELASESSEPTMAEALRALASDYLARAAKLRFE
Ga0066388_10448950613300005332Tropical Forest SoilMLSSNDYKELAAQCTELASELSEPTMAEALRVLASDYLARAAKLHHQTAD*
Ga0066388_10587128613300005332Tropical Forest SoilMLTSNDYKELAARCTELASESPEPTVAEALMALASDYLARAAKLHHQRAD*
Ga0008090_1004746313300005363Tropical Rainforest SoilMLPQPWSQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLH
Ga0008090_1583672233300005363Tropical Rainforest SoilMLTSNDYKELAARCAELASESSEPTVAEALRALASDYLARAAKL
Ga0070714_10046287213300005435Agricultural SoilMLTSNDYKELAARCTELASEFSEPAVAEALSALASDYLARAAKLHDQKAN*
Ga0070713_10053640323300005436Corn, Switchgrass And Miscanthus RhizosphereMLTWDDYRELAARCIELADESSEPSVAEALRALAADYLARGGKLYSEAAE*
Ga0066681_1058274213300005451SoilMLIADDYRQLAARCIELAGESSEPSVAEALRALAADYLARGGKLYREAE*
Ga0066905_10018608023300005713Tropical Forest SoilMLTSNDYKELAVRCTELASESPEPTVAEALMALASDYLARAAKLHHQRAD*
Ga0066905_10039116623300005713Tropical Forest SoilMLTSNDYKDLAARCTELASESPEPTVAQALMALASDYLARAAKLHHQTAD*
Ga0066905_10232520313300005713Tropical Forest SoilMLTSEDYKQLAERCVELASECSAPTVAEALRALAVD
Ga0066903_10069951033300005764Tropical Forest SoilMLTSNDYKELAARCTELASESPEPTVAEALRALASDYLARAAKLHYQTAD*
Ga0066903_10139363513300005764Tropical Forest SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLGGL*
Ga0066903_10200485613300005764Tropical Forest SoilMLTLDDYEELATRCTELASESSEPTVAEALRALASDYLARAAKLHRQTAN*
Ga0066903_10235487523300005764Tropical Forest SoilMLTSNDYKELAARCSELATESSEPTVTEALRALASDYLVRAAQLRHQTTD*
Ga0066903_10389314813300005764Tropical Forest SoilMLTSNDYKELAARCTELASESSEPTVAEALRALAS
Ga0066903_10495937913300005764Tropical Forest SoilMLTSNDYKELAARCTELASESSEPTVVEALRALASDYL
Ga0066903_10698944413300005764Tropical Forest SoilMLTSNDYKELAARCAELASESAEPTVAEALRALASD
Ga0066903_10850034713300005764Tropical Forest SoilMLTSNDYKELAARCTELASESPEPTVAEALIALASDYLARAAKLHHQRAD*
Ga0066903_10852541913300005764Tropical Forest SoilMLTSNDYKELAAQCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD*
Ga0081455_1012146313300005937Tabebuia Heterophylla RhizosphereLLTSDDYKELAARCIELASESSERTVAEALKALASDYLARAVKLRSRTAE*
Ga0081538_1001229283300005981Tabebuia Heterophylla RhizosphereMLTSDDYNQLADRCVELANECSEPAVVEALRALALDYLARAAKLHGQTADSRPQMQTT*
Ga0070717_1148040923300006028Corn, Switchgrass And Miscanthus RhizosphereMLSAEDYRELSARCIELADESSEPSVAEALRALAADYLARGGKLYSEAAE*
Ga0075364_1082064523300006051Populus EndosphereMLTSNDYKELAARCTELASESSEPTVAEALMALASDYLARAAKLHHQIAN*
Ga0075428_10093566123300006844Populus RhizosphereMLTSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHHQTA*
Ga0075418_1021476063300009100Populus RhizosphereMTRQASAMLTSEDYKQLGERCAELASECSAPTVAEALRALAVDYLSRAA
Ga0075418_1131228923300009100Populus RhizosphereMLSSNDYRELAARCTELASESSEPTVAEALMALASDYLARPAKLHRQTA
Ga0075418_1180813713300009100Populus RhizosphereMLTSNDYRELAARCTELASESSEPTVAEALMALASDYLARPAKLHRQTA
Ga0066709_10199116523300009137Grasslands SoilMLTADDYSELAARCIELAGECSEPSVAEALSALAADYLARGGKLYREAAE*
Ga0126374_1080161113300009792Tropical Forest SoilDYEELAARCTELASESSEPTVAEALRALASDYLARAAKLHFARHEHCRR*
Ga0126380_1014161433300010043Tropical Forest SoilMLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHHQTAD*
Ga0126380_1016637423300010043Tropical Forest SoilMLTSNDYKELAAQCSELASEALIALASDYLSRAGKLHHQTAD*
Ga0126380_1088451413300010043Tropical Forest SoilSNDYKELAVRCTELASESPEPTVAEALMALASDYLARAAKLHHQRAD*
Ga0126384_1178806923300010046Tropical Forest SoilMLTSNDYKELAAQCGELASEALIALASDYLSRAGKLHHQTAD*
Ga0126382_1049175013300010047Tropical Forest SoilMLTSNDYKELEARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLEPR
Ga0126382_1202638123300010047Tropical Forest SoilMLTSNDYKELAIRCTELASESSEPTVAEALRALASDYLARAAKLH
Ga0126378_1109660233300010361Tropical Forest SoilMLTSNDYNELAARCTELASEFSEPAVAEALRALASDYLALAAKLHHQTAE*
Ga0126379_1207685613300010366Tropical Forest SoilMLTSNDYKELAARCAELASESSEPTMAEALRALASDYLARAAKL
Ga0126379_1223219913300010366Tropical Forest SoilMLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLH
Ga0126379_1315289213300010366Tropical Forest SoilNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHNQTAD*
Ga0132258_1207012923300015371Arabidopsis RhizosphereMLTSNDYKELAARCSELAGESSAPTVTEALRALASDYLVRAAQLRHQTKD*
Ga0132256_10104587813300015372Arabidopsis RhizosphereQRAMLSSNDYRELAARCTELASESSELTVAEALRALASDYLARAAKLHRQTAD*
Ga0132257_10013384173300015373Arabidopsis RhizosphereMLSSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHRQTAD*
Ga0182033_1129702513300016319SoilDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0182035_1113501713300016341SoilQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0182032_1081869313300016357SoilMLTSNDFTELAARCTGLASEASEPTVAEALRALASDYLARAAK
Ga0182040_1120594513300016387SoilMLPQPRSQRIMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAA
Ga0182039_1007862943300016422SoilMLTSNDYKELAAQCAELASESSEPTVAEALRALASDYLARA
Ga0182039_1099328313300016422SoilMLTLNDYKELAARCTELASESSEPTVAEALRALASDYLARA
Ga0182038_1047463623300016445SoilMLTSNDYKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHHQTAD
Ga0190267_1116216223300019767SoilMLISEDYKQLAERCLKLAGESSDPVVAAALRALATDY
Ga0210382_1042513513300021080Groundwater SedimentMVQDEMLISEDYKQLAERCMRLARECSDPDGAEALRALALDYL
Ga0210400_1154679113300021170SoilMLTSNDYKELAARCAELASEFSEPTVAEALRALASDYLARAAKLHF
Ga0126371_1142873413300021560Tropical Forest SoilKELAARCTELASEFSEPAVAEALRALASDYLAHAVKLHNQTAD
Ga0126371_1196132113300021560Tropical Forest SoilNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0126371_1226140123300021560Tropical Forest SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLH
Ga0208990_111229013300027663Forest SoilMLVSEDYKQLAERCMKLVSECSDPTVAEALRALASDYLARA
Ga0209382_1104837823300027909Populus RhizosphereMLTSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHHQTA
Ga0307323_1032960713300028787SoilMVQDEMLISEDYKQLAERCMRLASECSDPDGAEALRAL
Ga0307299_1031117013300028793SoilMLTSNDYKELAARCTELASEFSEPAVAEALSALASDYLARAAKLHHQTAD
Ga0307296_1015755023300028819SoilMLTSNDYKELAARCTELASEFSEPAVAEALSALASDYLALAAKLHHQTAD
Ga0318541_1000978483300031545SoilMLTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0310915_1051333113300031573SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDY
Ga0318561_1063355323300031679SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKLHFVNQGTRLQ
Ga0318560_1053270513300031682SoilTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0306917_1100685913300031719SoilQRAMLTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0318500_1039214913300031724SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYL
Ga0306918_1059672433300031744SoilMLPQPWSQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTA
Ga0318537_1007374133300031763SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKL
Ga0318535_1027115533300031764SoilMLTSNDYKELAARCTELASESCEPTVAEALRALASDYL
Ga0318546_1055576613300031771SoilMLTSNDHKELAARCTELASESSEPTVAEALRALASDYLARAAKRHFVFLETKARG
Ga0318551_1016839513300031896SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGK
Ga0306923_1038575023300031910SoilELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLE
Ga0306923_1041067533300031910SoilMLPQPWSQRAMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0306923_1094239733300031910SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKLHF
Ga0310912_1144099113300031941SoilMLTSNDYKELAARCTELASESPEPTVAEALRALASDYL
Ga0310913_10011310143300031945SoilMLTSNDHKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVF
Ga0310913_1014374923300031945SoilMLSSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLE
Ga0310909_1090693133300031947SoilMLTSNDYKELAARCTELAGESSEPTVAEALRALASDYPARAAK
Ga0306926_1159382613300031954SoilMLTLNDYKELAARCTELASESSEPTVAEALRALASDYLARAA
Ga0318530_1046808913300031959SoilMLTSNDYKELAARCTELAGESSEPTVAEALRALASDYLARAA
Ga0306922_1221503713300032001SoilMLTSNDYTELAARCTELASESSEPTVAEALRALASDY
Ga0318549_1007297413300032041SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAGKLH
Ga0318532_1005759313300032051SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARDGKLHF
Ga0318505_1037298423300032060SoilPWSLRAMLSSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFVFLE
Ga0306924_1023371813300032076SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHF
Ga0318518_1043613513300032090SoilLTSNDYKELAARCTELASESSEPTVAEAPRALASDYLARAAKLHHQTAD
Ga0307471_10186340323300032180Hardwood Forest SoilMTWSQRAMLSSNDYRELAARCTELASESSEPTVAEALMALASDYLARAAKLHRQTAD
Ga0306920_10224576633300032261SoilMLTSNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHHQTAD
Ga0306920_10267378013300032261SoilMLTSNDHKELAARCTELASESSEPTVAEALRALASDYLARAAKLHFV
Ga0306920_10319620133300032261SoilMLTSNDYAELAARCTELASESSEPTVAEALRALASDYLAR
Ga0310914_1044888413300033289SoilMLTLNDYKELAARCTELASESSEPTVAEALRALASDYLARAAKLHF
Ga0247830_1098016023300033551SoilMLTSNDYKELAAQCTELASEFSEPAVAEALSALASDYLARAANLHHQTAD


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