Scaffold Ga0066903_100103624

Overview

Basic Information

• Taxon OID: 3300005764
• Scaffold ID: Ga0066903_100103624
• Source Dataset Name: Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3859
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama: Oeste
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013323	Metagenome / Metatranscriptome	272	Y
F040516	Metagenome / Metatranscriptome	161	Y
F042788	Metagenome / Metatranscriptome	157	N
F064758	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066903_1001036243	F040516	N/A	MDLRVGDRFADESGEWEVIASPYTTAGGRIVHARVQRNNEPASWQIRSWDAFKRISVIRASAEEDKR*
Ga0066903_1001036245	F013323	GAG	MQLKCAKCSEPIAFTDIIESSDGRLSHVDCKRPKVLTPDERALVFLYCSDHVVARCPACDIAYRYTQLAADMVGGNRTNMCPRCRRDLTEAVRAHLFRCAMLPSEVQARAHDVRQAAQHLVKESQQVRDRSDVLIREAEAVLFRSQRALREAMSKRTAS*
Ga0066903_1001036246	F042788	AGGAG	MYMRPLIAGFVVAEIVLNATSLVGQPLDIKPPTTTGPEVGPDHDQRRRGESSVARPGLNEPHFISPLSVNTDAGQAGIAGWISTNPSVPPGHSLSGDGAGSLGFGVAAEWGVRPRSKTLIR*
Ga0066903_1001036248	F064758	GGA	MTALIAILLLIGMFVLGARVHGVRHSFWKFLAFVTACVVVLALVLAFLAG*