Metagenome / Metatranscriptome Family F064758

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F064758
Family Type	Metagenome / Metatranscriptome
Number of Sequences	128
Average Sequence Length	49 residues
Representative Sequence	VTALLAFLLLIVMLVIGARVRGVRDSFWKFLAFVVACVVVLALLLAILAQ
Number of Associated Samples	83
Number of Associated Scaffolds	128

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.66 %
% of genes near scaffold ends (potentially truncated)	35.94 %
% of genes from short scaffolds (< 2000 bps)	82.81 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.375 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (28.125 % of family members)
Environment Ontology (ENVO)	Unclassified (52.344 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.156 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.97% β-sheet: 0.00% Coil/Unstructured: 41.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 128 Family Scaffolds
PF00034	Cytochrom_C	3.91
PF04392	ABC_sub_bind	3.12
PF00571	CBS	3.12
PF01042	Ribonuc_L-PSP	2.34
PF00072	Response_reg	1.56
PF00582	Usp	1.56
PF01590	GAF	1.56
PF00239	Resolvase	1.56
PF03631	Virul_fac_BrkB	0.78
PF04314	PCuAC	0.78
PF03358	FMN_red	0.78
PF04909	Amidohydro_2	0.78
PF04326	AlbA_2	0.78
PF13374	TPR_10	0.78
PF13240	zinc_ribbon_2	0.78
PF01425	Amidase	0.78
PF00126	HTH_1	0.78
PF13185	GAF_2	0.78
PF12773	DZR	0.78
PF00589	Phage_integrase	0.78
PF13701	DDE_Tnp_1_4	0.78
PF00118	Cpn60_TCP1	0.78
PF01209	Ubie_methyltran	0.78
PF01569	PAP2	0.78
PF06725	3D	0.78
PF01145	Band_7	0.78
PF00989	PAS	0.78
PF04172	LrgB	0.78
PF13191	AAA_16	0.78

COG ID	Name	Functional Category	% Frequency in 128 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.12
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	2.34
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.56
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.56
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.78
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.78
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.78
COG1346	Putative effector of murein hydrolase	Cell wall/membrane/envelope biogenesis [M]	0.78
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.78
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.78
COG2847	Copper(I)-binding protein	Inorganic ion transport and metabolism [P]	0.78
COG2865	Predicted transcriptional regulator, contains HTH domain	Transcription [K]	0.78

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.38 %
Unclassified	root	N/A	40.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.38 %
Unclassified	root	N/A	40.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.38 %
Unclassified	root	N/A	40.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.62 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	31.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.12 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.62 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	31.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.34 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.56 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	1.56 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.62 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	29.69 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.34 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	1.56 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.56 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.56 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.62 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	22.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.34 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	1.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.56 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.56 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	22.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.34 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.56 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.56 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	22.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.34 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1.56 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.56 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.56 %
Ramlibacter agri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter agri	0.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.78 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1140472	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1232	Open in IMG/M
3300004267\|Ga0066396_10016933	Not Available	945	Open in IMG/M
3300004267\|Ga0066396_10023742	Not Available	847	Open in IMG/M
3300004268\|Ga0066398_10008199	All Organisms → cellular organisms → Bacteria	1442	Open in IMG/M
3300004633\|Ga0066395_10084313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1496	Open in IMG/M
3300004633\|Ga0066395_10363450	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	807	Open in IMG/M
3300005174\|Ga0066680_10008650	All Organisms → cellular organisms → Bacteria	5105	Open in IMG/M
3300005295\|Ga0065707_10188925	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300005332\|Ga0066388_100074520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3723	Open in IMG/M
3300005332\|Ga0066388_100171007	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300005332\|Ga0066388_101039840	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005332\|Ga0066388_102219037	Not Available	991	Open in IMG/M
3300005363\|Ga0008090_11648839	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	724	Open in IMG/M
3300005440\|Ga0070705_100456859	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005536\|Ga0070697_100025151	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4747	Open in IMG/M
3300005552\|Ga0066701_10378216	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	876	Open in IMG/M
3300005713\|Ga0066905_100128996	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1781	Open in IMG/M
3300005713\|Ga0066905_101720874	Not Available	576	Open in IMG/M
3300005713\|Ga0066905_102016884	Not Available	536	Open in IMG/M
3300005764\|Ga0066903_100103624	All Organisms → cellular organisms → Bacteria	3859	Open in IMG/M
3300005764\|Ga0066903_100405427	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2246	Open in IMG/M
3300005764\|Ga0066903_100556281	All Organisms → cellular organisms → Bacteria	1970	Open in IMG/M
3300005764\|Ga0066903_101133950	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1445	Open in IMG/M
3300005764\|Ga0066903_101353203	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	1334	Open in IMG/M
3300005764\|Ga0066903_103520128	Not Available	844	Open in IMG/M
3300005764\|Ga0066903_104364055	Not Available	756	Open in IMG/M
3300005764\|Ga0066903_108073395	Not Available	539	Open in IMG/M
3300006049\|Ga0075417_10300029	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	779	Open in IMG/M
3300006358\|Ga0068871_100746870	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300006852\|Ga0075433_10176301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1902	Open in IMG/M
3300006854\|Ga0075425_102044965	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300006914\|Ga0075436_101558584	Not Available	502	Open in IMG/M
3300009094\|Ga0111539_10920039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1017	Open in IMG/M
3300009100\|Ga0075418_11161094	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	836	Open in IMG/M
3300009147\|Ga0114129_10042526	All Organisms → cellular organisms → Bacteria	6398	Open in IMG/M
3300009156\|Ga0111538_13384432	Not Available	554	Open in IMG/M
3300009162\|Ga0075423_10270356	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1781	Open in IMG/M
3300009792\|Ga0126374_10025618	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300009792\|Ga0126374_10273705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1116	Open in IMG/M
3300010046\|Ga0126384_11396567	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010046\|Ga0126384_11861010	Not Available	573	Open in IMG/M
3300010047\|Ga0126382_12376505	Not Available	514	Open in IMG/M
3300010048\|Ga0126373_12110247	Not Available	625	Open in IMG/M
3300010358\|Ga0126370_10550744	Not Available	985	Open in IMG/M
3300010358\|Ga0126370_10595200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	954	Open in IMG/M
3300010358\|Ga0126370_10744751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	867	Open in IMG/M
3300010359\|Ga0126376_10024808	Not Available	3973	Open in IMG/M
3300010359\|Ga0126376_10241736	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300010359\|Ga0126376_10341366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1323	Open in IMG/M
3300010359\|Ga0126376_10365759	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1285	Open in IMG/M
3300010359\|Ga0126376_11343114	Not Available	737	Open in IMG/M
3300010359\|Ga0126376_12034725	Not Available	617	Open in IMG/M
3300010360\|Ga0126372_10951916	Not Available	866	Open in IMG/M
3300010360\|Ga0126372_11156761	Not Available	796	Open in IMG/M
3300010361\|Ga0126378_10700914	Not Available	1124	Open in IMG/M
3300010361\|Ga0126378_10738190	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1095	Open in IMG/M
3300010361\|Ga0126378_13146165	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	525	Open in IMG/M
3300010362\|Ga0126377_10663241	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1093	Open in IMG/M
3300010362\|Ga0126377_11905786	Not Available	670	Open in IMG/M
3300010366\|Ga0126379_11930081	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	693	Open in IMG/M
3300010366\|Ga0126379_12643253	Not Available	599	Open in IMG/M
3300010366\|Ga0126379_13058714	Not Available	560	Open in IMG/M
3300010366\|Ga0126379_13358337	Not Available	536	Open in IMG/M
3300010376\|Ga0126381_100973716	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1223	Open in IMG/M
3300010398\|Ga0126383_10099081	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300010398\|Ga0126383_11198906	Not Available	849	Open in IMG/M
3300010398\|Ga0126383_11282753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	822	Open in IMG/M
3300010398\|Ga0126383_11398410	Not Available	790	Open in IMG/M
3300010398\|Ga0126383_11880176	Not Available	687	Open in IMG/M
3300010400\|Ga0134122_12444121	Not Available	571	Open in IMG/M
3300012350\|Ga0137372_11218242	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	507	Open in IMG/M
3300012948\|Ga0126375_10700309	Not Available	788	Open in IMG/M
3300012971\|Ga0126369_10043910	All Organisms → cellular organisms → Bacteria	3773	Open in IMG/M
3300012971\|Ga0126369_10812529	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1018	Open in IMG/M
3300013297\|Ga0157378_11148218	Not Available	815	Open in IMG/M
3300013306\|Ga0163162_13391364	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	509	Open in IMG/M
3300015371\|Ga0132258_10212882	All Organisms → cellular organisms → Bacteria → Proteobacteria	4696	Open in IMG/M
3300015371\|Ga0132258_10287377	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4039	Open in IMG/M
3300015371\|Ga0132258_10357970	All Organisms → cellular organisms → Bacteria	3611	Open in IMG/M
3300015371\|Ga0132258_12455694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1305	Open in IMG/M
3300015372\|Ga0132256_101183172	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300016270\|Ga0182036_10196850	Not Available	1475	Open in IMG/M
3300016294\|Ga0182041_10050716	Not Available	2806	Open in IMG/M
3300016319\|Ga0182033_10709535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	881	Open in IMG/M
3300016319\|Ga0182033_10859155	Not Available	802	Open in IMG/M
3300016404\|Ga0182037_11841221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300016445\|Ga0182038_10513378	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300017939\|Ga0187775_10021793	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1760	Open in IMG/M
3300017974\|Ga0187777_10426485	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300018060\|Ga0187765_11174665	Not Available	537	Open in IMG/M
3300018468\|Ga0066662_10070899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2333	Open in IMG/M
3300021560\|Ga0126371_11891582	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300025922\|Ga0207646_10781091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	851	Open in IMG/M
3300027527\|Ga0209684_1018374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300027654\|Ga0209799_1041356	Not Available	1028	Open in IMG/M
3300027873\|Ga0209814_10239120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	787	Open in IMG/M
3300027874\|Ga0209465_10088879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1509	Open in IMG/M
3300027907\|Ga0207428_11138386	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300031543\|Ga0318516_10059081	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2105	Open in IMG/M
3300031561\|Ga0318528_10800294	Not Available	504	Open in IMG/M
3300031564\|Ga0318573_10150525	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1220	Open in IMG/M
3300031564\|Ga0318573_10607373	Not Available	589	Open in IMG/M
3300031573\|Ga0310915_10886147	Not Available	626	Open in IMG/M
3300031640\|Ga0318555_10089953	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300031640\|Ga0318555_10648861	Not Available	571	Open in IMG/M
3300031679\|Ga0318561_10437535	Not Available	719	Open in IMG/M
3300031720\|Ga0307469_10119701	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300031720\|Ga0307469_10637127	Not Available	958	Open in IMG/M
3300031723\|Ga0318493_10538252	Not Available	648	Open in IMG/M
3300031740\|Ga0307468_100002478	All Organisms → cellular organisms → Bacteria → Proteobacteria	5687	Open in IMG/M
3300031740\|Ga0307468_100009708	Not Available	3687	Open in IMG/M
3300031740\|Ga0307468_102258490	Not Available	528	Open in IMG/M
3300031768\|Ga0318509_10165455	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300031820\|Ga0307473_10024239	All Organisms → cellular organisms → Bacteria → Proteobacteria	2534	Open in IMG/M
3300031846\|Ga0318512_10573173	Not Available	575	Open in IMG/M
3300031879\|Ga0306919_10082367	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300031942\|Ga0310916_10073354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2685	Open in IMG/M
3300031947\|Ga0310909_10992101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	686	Open in IMG/M
3300031959\|Ga0318530_10475135	Not Available	519	Open in IMG/M
3300032001\|Ga0306922_10537678	Not Available	1243	Open in IMG/M
3300032055\|Ga0318575_10488984	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300032063\|Ga0318504_10311959	Not Available	745	Open in IMG/M
3300032091\|Ga0318577_10379958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300032180\|Ga0307471_104156514	Not Available	511	Open in IMG/M
3300032261\|Ga0306920_102247109	Not Available	757	Open in IMG/M
3300033289\|Ga0310914_11397057	Not Available	603	Open in IMG/M
3300033289\|Ga0310914_11742882	Not Available	527	Open in IMG/M
3300033290\|Ga0318519_10448599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter agri	773	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.16%
Host-Associated	Host-Associated	14.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.16%
Plants	Host-Associated → Plants	14.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.91%
Roots	Host-Associated → Plants → Roots	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.50%
Loam	Environmental → Terrestrial → Soil → Loam	20.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.12%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.38%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.12%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.12%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.34%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.78%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.78%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	28.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.03%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.34%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.34%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.78%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.78%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.78%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_11404724	2228664022	Soil	VTALIAFLLLVVMFVIGSLVHGARSSFWKLLAFVTGCVVVLALLYVILAK
Ga0066396_100169332	3300004267	Tropical Forest Soil	MTALIAFLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALALAFLAR*
Ga0066396_100237421	3300004267	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGARHSFWKFLVFVLACIVVLALLLAILAK*
Ga0066398_100081993	3300004268	Tropical Forest Soil	MNMRALLAFLFLIVMLVIGARVRGVRDSLWRFLAFIAACVVVLALLLAILAK*
Ga0066395_100843133	3300004633	Tropical Forest Soil	MTALIAFLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVL
Ga0066395_103634502	3300004633	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGVRDSLWKFLAFIAACVVVLALLLAILAK*
Ga0066680_100086504	3300005174	Soil	VTALIAFLLLLVMLAIGARVRGVRFSFWKLLAFFTACVVVLALLLAILAK*
Ga0065707_101889252	3300005295	Switchgrass Rhizosphere	VTALLAFLLLIVVLVFGSRVHGTRHSFWKVLAFVVACVVILALL
Ga0066388_1000745206	3300005332	Tropical Forest Soil	VTALIAFLLLIVMLVIGARVHGVRHSFWKFLVFVTACVVVLGLLLAFLAK*
Ga0066388_1001710072	3300005332	Tropical Forest Soil	MTALIALLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALVLAFLAG*
Ga0066388_1010398402	3300005332	Tropical Forest Soil	MEEGHEEDVTAVVALLLLIVMFVIGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK*
Ga0066388_1022190371	3300005332	Tropical Forest Soil	VMLVIGARVRGVRQSFWKFLVFVLACVVVLVLLLTILAK*
Ga0008090_116488391	3300005363	Tropical Rainforest Soil	RPAGYATRWGISVTALIAFLLLIVMLVLGSRIHGVRESRWKFLAFVTACIFVLVLLLVILSR*
Ga0070705_1004568592	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VTALIAFVLLIAMMVLGARVRGVRQSLWKFLAFVAACIVVLALLLAILAR*
Ga0070697_1000251515	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTALIAFLLLLVMLAIGARVRGVRFSLWKILAFATACVVVLALLLAILAK*
Ga0066701_103782163	3300005552	Soil	VTALIAFLLLLVMLAIGARVRGVRFSFWKLLAFFTACVVVLALLLAIL
Ga0066905_1001289964	3300005713	Tropical Forest Soil	VRALFAFLLLIVMLVIGARVRGVRQSFWKFLVFVLACVVVLVLLLTILAK*
Ga0066905_1017208742	3300005713	Tropical Forest Soil	MTALIAFLLLIGMFVLGSRVHGVRHSFWKFLAFVTACIVVL
Ga0066905_1020168841	3300005713	Tropical Forest Soil	MTALIAFLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALVLAFLAR*
Ga0066903_1001036248	3300005764	Tropical Forest Soil	MTALIAILLLIGMFVLGARVHGVRHSFWKFLAFVTACVVVLALVLAFLAG*
Ga0066903_1004054274	3300005764	Tropical Forest Soil	LIAFLLLIVMLVIGARVRGVRDSFWKFQPITACAVVLALLLAILGT*
Ga0066903_1005562816	3300005764	Tropical Forest Soil	VIGARVPGVRDSLWKFLAFIAACVVVLALLLAILAK*
Ga0066903_1011339503	3300005764	Tropical Forest Soil	VKALLAFLLLIVMLVIGARVRGVRDSFWKFLAFVVACVVVLALLLAILAK*
Ga0066903_1013532033	3300005764	Tropical Forest Soil	VTALLAFLLLIVLLVIGARVRGVRDSLWKFLAFVAACVVVLALLLAILAK*
Ga0066903_1035201281	3300005764	Tropical Forest Soil	VRALLAFVLLIVMLVIGDRVRGVRHSFWKFLVFVAACVVVLALLLAILAK*
Ga0066903_1043640551	3300005764	Tropical Forest Soil	VIGARVRGVRDSLWKFLAFIAACVVVLALLLAILAK*
Ga0066903_1080733951	3300005764	Tropical Forest Soil	VTALLACLLLIVMLVVGARVRGVRDSFWKFLAFVVACAVVLALLLAILAK*
Ga0075417_103000292	3300006049	Populus Rhizosphere	VTAAIAFLLLLIMFVIGSRVHGVRDSWWKLLAFVTACVVVLALILAILAK*
Ga0068871_1007468702	3300006358	Miscanthus Rhizosphere	RPPGADGESKNVTALIAFVLLIAMMVLGARVRGVRQSLWKFLAFVAACIVVLALLLAILAR*
Ga0075433_101763012	3300006852	Populus Rhizosphere	VTALIAFVLLIVMLVLGSRVHGVRQSLWKFLAFVAACIVVLALLLAILAR*
Ga0075425_1020449651	3300006854	Populus Rhizosphere	VTAAIAFLLLLIMFVIGSRVHGVRDSWWKLLAFVTACVVVLAL
Ga0075436_1015585841	3300006914	Populus Rhizosphere	VTAVIAFLLLIVMLAIGARVHGVRQSRWKFLAFVTACVVVLALLLAILAP*
Ga0111539_109200392	3300009094	Populus Rhizosphere	VTAVVALLLLVVMFVTGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK*
Ga0075418_111610942	3300009100	Populus Rhizosphere	MTALITFLLLIGMFVLGARVHGVRHSFWKFVAFVTACIVVLALLLVLLAK*
Ga0114129_100425265	3300009147	Populus Rhizosphere	VTAVVALLLLVVMFVTGSRVHGVRSSPWKLLAFVVACLVVLALLVLILAK*
Ga0111538_133844323	3300009156	Populus Rhizosphere	VTAVVALLLLVVMFVIGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK*
Ga0075423_102703563	3300009162	Populus Rhizosphere	VTAAIALLLLLIMFVIGSRVHGVRDSWWKLLAFVTACVVVLALILAILAK*
Ga0126374_100256182	3300009792	Tropical Forest Soil	MTALIAFILLIGMFVLGARVHGVRHSFWKFLAFVTACLVVLALVLAFLAG*
Ga0126374_102737053	3300009792	Tropical Forest Soil	VRALFAFLLLIVMLVIGARVRGVRQSFWKFLVFVLACVVVLALLLAILAK*
Ga0126384_113965672	3300010046	Tropical Forest Soil	VKALFAFLLLIVMLVLGARVHGVRHSFWKFLAFVTACLIVLGLLLAFLAK*
Ga0126384_118610101	3300010046	Tropical Forest Soil	VTALIAFLLLIVILVIGARVHGVRHSFWKFLAFVTACVVVLGLLLAFLAK*
Ga0126382_123765051	3300010047	Tropical Forest Soil	MTALIAFLLLIGMFVLGSRVHGVRHSFWKFLAFVAACIVVLVLVLAVLAR*
Ga0126373_121102471	3300010048	Tropical Forest Soil	VTALLAFLLPIVMLVNRARVRGVRDSFWKFLAFVVACVVVLALLA
Ga0126370_105507443	3300010358	Tropical Forest Soil	MTALIAFILLVGMFILGARVHGVRHSFWKFLAFVTACLVVLALVLAFLSR*
Ga0126370_105952003	3300010358	Tropical Forest Soil	MTALIAFILLIGMFVLGARVHGVRHSFWKFLAFVTACVVVLALVLAFLAG*
Ga0126370_107447514	3300010358	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGVRDSLWKFLAFIAACV
Ga0126376_100248086	3300010359	Tropical Forest Soil	MTALIAFLLLIGMFVLGARIHGVRHSFWKFLAVVTACIVVLALALAFLAR*
Ga0126376_102417363	3300010359	Tropical Forest Soil	HGGRRTVTAVIAFLLLIVMLAIGARVHDVRQSRWKFLAFVTACVVVLALVLAILAQ*
Ga0126376_103413661	3300010359	Tropical Forest Soil	MTALIAFILLIGMFILGARVHGARHSFWKFLAFVTACLV
Ga0126376_103657594	3300010359	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVHGVRHSFWKFLAFVTACLIVLGLLLAFLAK*
Ga0126376_113431142	3300010359	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGVRDSFWKFVAFVVACVVVLALLLAILAQ*
Ga0126376_120347251	3300010359	Tropical Forest Soil	VGGQEDVTALLAFLLLIVMLVIGARVHGVRHSFWKFLAFVTACVVVLALLLAILAK*
Ga0126372_109519161	3300010360	Tropical Forest Soil	MTALIAFILLIGMFILGARVHGVRHSFWKFLAFVTACLVVLALVLAFLAK*
Ga0126372_111567613	3300010360	Tropical Forest Soil	VTALLAFLLLIVMLLIGARVHGVRDSFWKFLAFITACVVVLALLLAILAK*
Ga0126378_107009143	3300010361	Tropical Forest Soil	VTALLAFLFLIVMLVIGARVRGVRDSLWRFLAFIAACVVVLALLLAILAK*
Ga0126378_107381901	3300010361	Tropical Forest Soil	GMSALIAFLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALALAFLAR*
Ga0126378_131461652	3300010361	Tropical Forest Soil	VTALLAFLLLIVMLLIGARVHGVRDSLWKFLAFITACVVVLALLLAILAK*
Ga0126377_106632411	3300010362	Tropical Forest Soil	MTAVIAFLLLIGMFVLGARVHGVRQSFWKFLAFVTACIVVLALVLAFLAG*
Ga0126377_119057862	3300010362	Tropical Forest Soil	MTALIAFLLLIGMFVLGSRVHGVRHSFWKFLAFVTACIVVLVLVLAVLAR*
Ga0126379_119300811	3300010366	Tropical Forest Soil	VTALIAFLLLIVMLVIGARVHGVRHSFWKFLAFVTA
Ga0126379_126432531	3300010366	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGVRDSLWKFLAFVAACVVVLAL
Ga0126379_130587142	3300010366	Tropical Forest Soil	MTALIAFLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALALAFLAG*
Ga0126379_133583371	3300010366	Tropical Forest Soil	ATRWGGQEDVTALLAFLLLIVMLVIGARVRGVRDSLWKFLAFIAACVVVLALLLAILAK*
Ga0126381_1009737162	3300010376	Tropical Forest Soil	VKALLAFLLLIVMLVIGARVRGVRDSLWRFLAFIAACVVVLALLLAILAK*
Ga0126383_100990814	3300010398	Tropical Forest Soil	WGSEDVRALFAFLLLIVMLVIGARVRGVRQSFWKFLVFVLACVVVLVLLLTILAK*
Ga0126383_111989062	3300010398	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGVRDSFWKFLAFVVACVVVLALLLAILAQ*
Ga0126383_112827531	3300010398	Tropical Forest Soil	VGVRDVTALLAFLLLIVMLVIGARVHGVQNSLWKFLAFITACVVVLALLLAILAK*
Ga0126383_113984102	3300010398	Tropical Forest Soil	VRALLAFVLLIVMLVIGARVRGVRHSFWKFLVFVAACVVVLALLLAILAK*
Ga0126383_118801761	3300010398	Tropical Forest Soil	MTALIAFILLIGMFMLGARVHGVRHSFWKFLAFVTACLVVLALVLAFLAG*
Ga0134122_124441212	3300010400	Terrestrial Soil	VTALSAFVLLIAMMVLGARVRGVRQSLWKFLAFVAACIVVLALLLAILAR*
Ga0137372_112182421	3300012350	Vadose Zone Soil	MTALIAFLLLVVMLALGARVHGVRHSFWKFLAFVTACIVVLGLVLAFLAK*
Ga0126375_107003092	3300012948	Tropical Forest Soil	MTALIAFILLSGMFILGARVHGARHSFWKFLAFVTACLVVLA
Ga0126369_100439101	3300012971	Tropical Forest Soil	LIVMLVIGARVRGVRDSLWKFLAFIAACVVVLALLLAILAK*
Ga0126369_108125291	3300012971	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGVRDSLWKFLAFVAACVVVLALLLAIL
Ga0157378_111482181	3300013297	Miscanthus Rhizosphere	VKALIAFLLLIAMLVLGARVRGVRDSFWKLLAFIAACIIVLALLLTILSK*
Ga0163162_133913641	3300013306	Switchgrass Rhizosphere	FLLLIAMLVLGARVRGVRDSFWKLLAFIAACIIVLALLLTILSK*
Ga0132258_102128824	3300015371	Arabidopsis Rhizosphere	VEEGREEDVTSVVELLLLVVMFVIGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK*
Ga0132258_102873777	3300015371	Arabidopsis Rhizosphere	VKALIAFLLLIAMLMLGARVRGVRDSFWKLLAFISACIVVLALLLTILSK*
Ga0132258_103579703	3300015371	Arabidopsis Rhizosphere	LIACLLLIVMLALGSRVHGVRESLWKFLAFVAACIVVLALLLAILAR*
Ga0132258_124556942	3300015371	Arabidopsis Rhizosphere	MGARNTVTALIAFLLLIVMLLLGSRVHGVRESLWKFLAFVAACIVVLALLLAILAR*
Ga0132256_1011831722	3300015372	Arabidopsis Rhizosphere	VEEGREEDVTSVVALLLLVVMFVIGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAT
Ga0182036_101968502	3300016270	Soil	VGSEDVTALLAFLLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLRAFLAK
Ga0182041_100507167	3300016294	Soil	MTALIAFILLIGMFVLGARVHGVRHSFWKFLAFVTACLVVLALVLAFLAE
Ga0182033_107095351	3300016319	Soil	MTALIALLLLIGMFVLGARVHGVRHSFWKFLAFVTACI
Ga0182033_108591552	3300016319	Soil	LLAFLLLIVMLVIGARIRGVRHSFWKFLLFVVACIVVPALLLAILAK
Ga0182037_118412211	3300016404	Soil	LIAFLLLIVMLVLGSRIHGVRESLWKSLAFVTACIFVLVLLLVILSR
Ga0182038_105133781	3300016445	Soil	IGARVRGVRHSLWKFLVFVVACVVVLALLLAILAK
Ga0187775_100217933	3300017939	Tropical Peatland	VRALLAFLLLIVMLVIGARVRGVRQSFWKFLAFVVACVVVLALLLAILAK
Ga0187777_104264852	3300017974	Tropical Peatland	VAALIAFVLLIVMLTLGSRVHGVRESLWKFLAFAAACIVVLGLLLVILAR
Ga0187765_111746651	3300018060	Tropical Peatland	LIAFVLLIVMLTLGSRVHGVRESLWKFLAFAAACIVVLGLLLVILAR
Ga0066662_100708994	3300018468	Grasslands Soil	VTALIAFLLLLVMLAIGARVRGVRFSFWKLLAFFTACVVVLALLLAILAK
Ga0126371_118915821	3300021560	Tropical Forest Soil	VVGSKRRDGVLAFLLLIVMLVIGARVRGVRDSFWKFLAFVVACAVVLALLLAILAK
Ga0207646_107810911	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	EHVTALIAFLLLLVMLAIGARVRGVRFSFWKLLAFFTACVVVLALLLAILAK
Ga0209684_10183742	3300027527	Tropical Forest Soil	VTALLAFLLLIVMLVIGARVRGARHSFWKFLVFVLACIVVLALLLAILAK
Ga0209799_10413564	3300027654	Tropical Forest Soil	LFLIVMLVIGARVRGVRDSLWRFLAFIAACVVVLALLLAILAK
Ga0209814_102391202	3300027873	Populus Rhizosphere	VTAAIAFLLLLIMFVIGSRVHGVRDSWWKLLAFVTACVVVLALILAILAK
Ga0209465_100888793	3300027874	Tropical Forest Soil	MTALIAFLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALAL
Ga0207428_111383862	3300027907	Populus Rhizosphere	VTAVVALLLLVVMFVTGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK
Ga0318516_100590812	3300031543	Soil	VVGSEDVTALLAFLLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLLAFLAK
Ga0318528_108002942	3300031561	Soil	LRPLLAFLVLIVMLVIGARVRGVRDSFWKLLAFVVACIVVLALLLAILAK
Ga0318573_101505251	3300031564	Soil	VTALLAFLLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLLAFLAK
Ga0318573_106073733	3300031564	Soil	VTALIAFLLLIVMLVLGSRIHGVRESLWKFLAFVAA
Ga0310915_108861471	3300031573	Soil	VRALLAFLLLIVMLVIGARIRGVRHSFWKFLLFVVACVVALALLLAILAK
Ga0318555_100899532	3300031640	Soil	VGSEDVTALLAFLLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLLAFLAK
Ga0318555_106488612	3300031640	Soil	VTAVIAFLLLIVMMVLGSRIHGVRESLWKFLAFVTACIFVLVLLLVILSR
Ga0318561_104375352	3300031679	Soil	LLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLLAFLAK
Ga0307469_101197012	3300031720	Hardwood Forest Soil	VKAVIAFLLLIVMLAIGARVHGVRQSRWKFLAFVTACVVVLALVLAILAQ
Ga0307469_106371272	3300031720	Hardwood Forest Soil	VTALIAFLLLLAMFVIGARVRGVRDSWWKLLAFVTACVVVLALLLAILSK
Ga0318493_105382522	3300031723	Soil	VRALLAFLLLIVMLVIGARIRGVRHSFWKFLLFVVACVVALA
Ga0307468_1000024781	3300031740	Hardwood Forest Soil	IGARVHGVRQSRWKFLAFATACVVVLALLLAILAP
Ga0307468_1000097082	3300031740	Hardwood Forest Soil	VEEGQEEDVTAVVALLLLVVMFVIGSRVHGVRSSPWKLLAFVVACLVVLALLFLILAK
Ga0307468_1022584901	3300031740	Hardwood Forest Soil	VTALIAFLLLLVMFVIGARVRGVRDSWWKLLAFVTACVVVLALLLAILSK
Ga0318509_101654551	3300031768	Soil	SGVVGSEDVTALLAFLLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLLAFLAK
Ga0307473_100242394	3300031820	Hardwood Forest Soil	AVIALLLLIVMLAIGARVHGVRQSRWKFLAFATACVVVLALLLAILAP
Ga0318512_105731732	3300031846	Soil	VTALIAFLLLIVMLVLGSRIHGVRESLWKFLAFVAACIVVLVLLLAI
Ga0306919_100823672	3300031879	Soil	MTALIALLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALVLAFLAR
Ga0310916_100733541	3300031942	Soil	MTALIALLLLIGMFVLGARVHGVRHSFWKFLAFVTACIVVL
Ga0310909_109921011	3300031947	Soil	MVLGSRIHGVRESLWKFLAFVTACIFVLVLLLVILSR
Ga0318530_104751351	3300031959	Soil	VTALLAFLLLIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALL
Ga0306922_105376781	3300032001	Soil	RHVRALLAFLLLIVMLVIGARIRGVRHSFWKFLLFVVACVVALALLLAILAK
Ga0318575_104889842	3300032055	Soil	ISVTALIAFLLLIVMLVLGSRIHGVRESLWKFLAFVAACIVVLVLLLAILAR
Ga0318504_103119592	3300032063	Soil	MTALIALLLLIGMFVLGARVHGVRHSFWKFLAFVTAC
Ga0318577_103799582	3300032091	Soil	RWGTRVTAVIAFLLLIVMMVLGSRIHGVRESLWKSLAFVTACIFVLVLLLVILSR
Ga0307471_1041565141	3300032180	Hardwood Forest Soil	AIGARVRGVRDSWWKLLAFVTACVVVLALLLAILSK
Ga0306920_1022471092	3300032261	Soil	VRALLAFLLLIVMLVIGARVRGVRHSFWKFLAFVAACVIVLALLLAILAK
Ga0310914_113970572	3300033289	Soil	LIVMLVIGARVHGVRHAFWKFLAFVTACIVVLALLLAFLAK
Ga0310914_117428821	3300033289	Soil	LIGMFVLGARVHGVRHSFWKFLAFVTACIVVLALVLAFLAR
Ga0318519_104485991	3300033290	Soil	VTALIAFLLLIVMLVLGSRIHGVRESLWKSLAFVTACIFVLVLLLVILSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F064758

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences