NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066903_100096665

Scaffold Ga0066903_100096665


Overview

Basic Information
Taxon OID3300005764 Open in IMG/M
Scaffold IDGa0066903_100096665 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3963
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011259Metagenome / Metatranscriptome293Y
F011803Metagenome / Metatranscriptome287Y
F023966Metagenome / Metatranscriptome208Y
F037883Metagenome / Metatranscriptome167Y
F070583Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0066903_1000966652F023966AGGAGMNQDNRVISRMGARELSEQEVEAVTGAFRVRHTLTPCFVDSKQQLLNGDQAIGECGP*
Ga0066903_1000966653F011803AGGAGMNDQNRVLTRRGARELTPTEADLIQGGFVTLSVCTNSPSPDGDHRVGEVGC*
Ga0066903_1000966655F070583AGGAGGMNDSNRVLTRTGARELNRDEVDRVSGSIGTLTACTWDPDFGPDGDAQIGEC*
Ga0066903_1000966657F011259AGGAGMSRHEDNRVLARAGARELTIEEIDYVNAAVQIHTNVCTAIMATATATGPGDGDGCSDTDRDPHFI*
Ga0066903_1000966658F037883AGGAGGVSSQRENNRVLLRLAARELTPDEIDEVSACGPPCRLTFTHLPHGGSDEDTQCP*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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