Scaffold Ga0078117_1118009

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1118009
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1968
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F062727	Metagenome / Metatranscriptome	130	Y
F065780	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_11180091	F065780	N/A	KRIITYIMENTWTWVGTGMVLITLSGPTLRQALLLTGAGILIHSLISLTQKDTE*
Ga0078117_11180092	F016388	AGGA	MNSAIAKALDLGQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTSEEISAAFGTAKKKAK*
Ga0078117_11180095	F062727	N/A	MDGGWALILSAVVTAVGGVIVALLAQFRKENQEDHAVVAGMLQHVFGSVSRVEVKVDKVVEDLEGHIKEHKK*