Scaffold Ga0078117_1003721

Overview

Basic Information

• Taxon OID: 3300005758
• Scaffold ID: Ga0078117_1003721
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2538
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002071	Metagenome / Metatranscriptome	596	Y
F011299	Metagenome / Metatranscriptome	292	Y
F013526	Metagenome / Metatranscriptome	270	Y
F029721	Metagenome / Metatranscriptome	187	Y
F091432	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_10037211	F029721	N/A	MKTYSIEDLLVGQTYHPRSLARRFQGGEITFAEKRENIWLDGYEAYAIRYRVGQSIKQNWATVAVKVAD*
Ga0078117_100372111	F002071	AGGA	MSNTLSVGQTYTTTQSGITGVIKKIDKHPSGVSRILLDVGGKDRWTSAK*
Ga0078117_10037212	F091432	AGGA	MDLKDFRDFINAQRLAEIKEKRNNNLTAILSVANATITETTRKEN*
Ga0078117_10037214	F013526	AGGAG	MKKNVLISFITEAETDIEAVFALNKILYQLPDSDLVKFDVFDVVECDLVK*
Ga0078117_10037216	F011299	N/A	MKNYWSDTARILRYASDKTHPAIFSKLVNDFAEVFAKENPKFDVTKFHEEANYRVPKFTSN*