Scaffold Ga0078117

Basic Information
Taxon OID	3300005758 Open in IMG/M
Scaffold ID	Ga0078117_1002045 Open in IMG/M
Source Dataset Name	Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005758 Open in IMG/M

Scaffold ID

Ga0078117_1002045 Open in IMG/M

Source Dataset Name

Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Singapore Centre on Environmental Life Sciences Engineering (SCELSE)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41370
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (20.31%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

41370

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (20.31%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.411221	Long. (^o)	103.905587	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Singapore

Coordinates

Lat. (^o)

1.411221

Long. (^o)

103.905587

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015997	Metagenome / Metatranscriptome	250	N
F018511	Metagenome / Metatranscriptome	234	N
F025505	Metagenome / Metatranscriptome	201	N
F031407	Metagenome / Metatranscriptome	182	N
F033801	Metagenome	176	Y
F034112	Metagenome / Metatranscriptome	175	N
F051740	Metagenome / Metatranscriptome	143	N
F060725	Metagenome	132	N
F064518	Metagenome	128	N
F090088	Metagenome / Metatranscriptome	108	N
F100712	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0078117_100204516	F033801	N/A	MKFEIKWKGGRIITEASDIEEAIKKFKELRIIVTEKEISIASFPWRSF*
Ga0078117_100204533	F015997	N/A	MSQLIQPSEVISGGVARPTPADIRLDKSLISPHIQDAEYRWIVPAIGVTFYNALVADKGNSTAFTSTAYQQLWDTQLKSFCANAVLYEASPYMVMQLGTNGLYTLDNEYGQNVGVEGLKFYQDTLLQRLDVKKKRIKDYLCACATSFTGFVPSAIGCPESTCNEDEEISDIYNTLGIVL*
Ga0078117_100204535	F051740	N/A	MIVREKSKLMMYVGADPTGKAGILKKAIGNFTQAELRGWYNANPSSVSQHVIFTPEKEIYEPIKEDSTSSSEQG*
Ga0078117_100204541	F018511	N/A	MKVQSIWGELAARIPDEFKEQVMASVDRTYRVLSIDPTDMDYLFYIYNNFVNHYEPERRNCPACRTKVVGKMRQIVQYWRDEQG*
Ga0078117_100204543	F090088	AGG	MDKEALAKKIFLEFYSSFILDDEIESTGRVLYLAKKASIIHLNLIKGILQHDEYIDNMAYLKDIINKINI*
Ga0078117_100204544	F060725	N/A	MIKLYIGGQEVDLNQEEVNVTIDYSIENIELGNISGAHSKRNVTLPATKTNVNIFQNITDPGAIITNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFIASNFKVSLIGNNADWFADVGNTLVRSLGWDDIEVSETTVKTNYNPTTAEHCFILMKWKAWENVDYITNNEMTPAIFIWQILEKAFRTKGYQLNSIFKTDPFNRLIIPMGLNLGADYLKDFVNLKASIPSPSLIDNITNPSPVLITFTDETTSPNFDTGGNYSSGIYTVPITATYTLKAELNIGNSIIIPDPLSELLVGWEINGTFAEGEDLSQETNFNDSVSIEFLTDLVEGDTVKFVVKHSNVSFLMGLNGSIEITGSKAIFESGRTFDLQYVIPITWYVRDIISDLTTIFNLAWETDVLNKKVYAYPKDDYTIRYRANSTGAISLTTFDGFFTGSNKYDLNTRDIEGSEFEILDGYKSSQVLAWATDDDTTNKEEERRGVNIYSGGYNFPTDRFENGVEFIYTKFFAKTIHISDVAITSGGVYGAQIPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRSGLDGYVRLYDENSSASSAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYSNVMQGIFKTFHLQSYKRIELGKVYTTFVKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNVTDLSKVTNTITLAGASPQTGTVTGSGSGLVGANGLVINIQLSYNPFLNSSTNVLVLPVNSGITNVSNVNANVMVFQNGQKLLPGVQYSITASTVTIDANTHYEGANYEVIVNGVTKG*
Ga0078117_100204546	F100712	N/A	MDATLQKLADDIGTLAMMVVANEWKAQGHNLTGSAIKQMETMVQFQINTLIVEGLIPDYMAINNSGVKAERIPYYPGSGNKTSKYINGLMRYAKQRFGASDKESKSIAFAIASKHKKEGMPTKASAKYSSTGKRTGFIETALDKNSQKFIELIENAIKYSVEVTIESYYKSILNR*
Ga0078117_100204550	F064518	N/A	VAESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEERVMEDLTKQKK*
Ga0078117_100204551	F034112	AGGA	MVVFNIGNKQVKYTYPETASDITMEQYMHFVKFLLPQHPQVEREAIDQLGEREQVYEKIKPYAKKLKIETKGKQQFDVIELLSYILDNDEVKDNVRRFLPALISKWQTHNDELTRRLEIMDKVWEAKVRYPYMATVVNYFTGIPLDACYGKVAESIELKYLQFLFEKILKALNTPDETKYKQLYDFNGKVYTLPDKLMEKSTLLEFSMAAQFDKAIMEINSQQAEGLLNVMAVLLKPIGMEYSDELFEQNKIDFLKMPLQTAYEVAFFLTKLSERYSLDLQTSMLQQAMASLN*
Ga0078117_100204552	F031407	N/A	MTDKEKAVTIIDIIEKITQEIIDKPNHRKRLLQMRSHLEKAVKLTGNGIKREWSRPQSLPIFQHQKAEAKPFVPDTSGDVLADNSTPTTKKGKRK*
Ga0078117_10020456	F025505	N/A	MNLPMIANQVEEKLQDVEIVISQRELRIFKTGVKEAIPKIGQVLRQILPLYGIDAKPEHLIEITEFVSTYKLMSVEELKLAFEKFARQELNLEDFKLYGRVDLHSIGKIINAYISWRQKIYYAMDADLEEKRQQEAIAKRRAKVAEEYDAEFDDKLAGFQKTLEDIPVFWYNECVKRGYITWLDGEKEKLWEEAKQLALKEKPDSDNYIDRHNHLRKIESGNIPRAKALAYQLAVWRKVLLRE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0078117_1002045

Overview

Ecosystem & Geography

Associated Families

Sequences