Scaffold Ga0076924_1085782

Overview

Basic Information

• Taxon OID: 3300005747
• Scaffold ID: Ga0076924_1085782
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - control T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20560
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F037986	Metagenome / Metatranscriptome	167	N
F047377	Metagenome / Metatranscriptome	150	Y
F050011	Metagenome	146	N
F074154	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076924_108578212	F074154	N/A	MNFFQLQNKLFYSNKSKQPEPLDSEGEQAFVPFLFNRWLTMYSKDTVGFVNETLNKYCGIFDTDKQKTYKLYYNLIPRLKFKRISYIKKVKKDKDKQEEFEQLKIIAKNNNMSVREIEMYNNMLD*
Ga0076924_108578213	F019756	N/A	MAQRSIDTLAPQKHLIDLSTNSDGDVGLTDEFELTMIFDDILLVEYVDENDTGEIQRNGIFVPTNALTKAWRKAKVILAGPKAEYTKPGDIVIFPNNLGVTVANIDVNGSTIKKGIFLNEDRLFGICKVKDDNSKSSS*
Ga0076924_108578214	F015734	N/A	MIIQRVALDSLLLKNVCEIRFVRRRPRAGDGPTRRMLCTKSYELLNSVNGRTTLNYAPPRGPKKINEAAENVLVVWDILMQDYRTINMNSCDLIQQIPDNEFWEYFNENIYPMSPEQKFNFMNS*
Ga0076924_108578215	F050011	N/A	MNVSLERFSDHIKPYLLQDVAICTDRKIIRKGKLKIFQINQHYAKLTLEDGVRTRIYEIPYPFEITTQGSKTIFCYKLSKLLNFGDLDLQVKFLDSSKKSKIYNENLYIMPLRKVDL*
Ga0076924_108578224	F047377	N/A	MSEETKKISTKDKIIKFIDAISGENYATANKYLQSAVQDKIEARIRQAAEKPLF*
Ga0076924_108578225	F037986	N/A	MTKEKLPTELEDVLTEESVETIETALKEKVELSVEAALASQDELYAEKLETLITQIDKDHSVKMQQIVEAVDKNNAAKLGNVIKKYETELNESASSFKETLVESISNYLEEYIDEAIPMTSIEEATRNNTAMTVLNNLRSTLAVDSSLMSESVKTAIVEGKNEMDELKAEIAELKKANETLNENYNQAKSAAFLENRCAKFSDKKSAYLKKVLSDKSPRFIEENFEYTARLFDRKEKEQLEVIREEAISNRTVKADAPKTVVAEKAKPSVPTNPYLEGLDMMK*