Scaffold Ga0076948_1003887

Overview

Basic Information

• Taxon OID: 3300005739
• Scaffold ID: Ga0076948_1003887
• Source Dataset Name: Cyanobacteria communities in tropical freswater systems - freshwater lake in Singapore
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4656
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Cyanobacterial Bloom Metagenomics Project

Source Dataset Sampling Location

• Location Name: Singapore
• Coordinates
  • Lat. (^o): 1.411221
  • Long. (^o): 103.905587

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011756	Metagenome / Metatranscriptome	287	Y
F022400	Metagenome	214	Y
F034906	Metagenome	173	Y
F072283	Metagenome / Metatranscriptome	121	N
F094887	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076948_100388711	F094887	N/A	MNKEMKEIDEVLTNLWWSAEISDSAKLWWNDHYREIVEKELAK*
Ga0076948_100388712	F006842	AGAAGG	MKTQSVYCGDHLTLITECGCLDYLKEIESSAKRLIQLTQEREKMK*
Ga0076948_100388714	F072283	GGAG	MQTMQDLIDLIKPILPNALIIDTDEGILIETGLELDLGGLLRPIEREGESE*
Ga0076948_10038874	F022400	AGG	MRRVVIESSQRTTLRLVGTGEESSGSALSPFGPVRAGLTTMQRTKEDQALMELLSSLERKITEANTKSCEVLNIFLHGTTHLVEPIVSSSNITTTN*
Ga0076948_10038875	F034906	AGG	MNNKQRLKGAADQAVRQRNYRRARERALTRLANDYPNVYRTYLEEEKRADEKMGKKWLDLDGNTRTTKSRS*
Ga0076948_10038877	F011756	AGGTGG	VSEPRYLFGDDYAYNGGYEELIDCNICKKMFDRVEYRSDTCSDCEDKIIKRERARA*