Scaffold Ga0076926_114566

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076926_114566

Scaffold Ga0076926_114566

Overview

Basic Information
Taxon OID	3300005738 Open in IMG/M
Scaffold ID	Ga0076926_114566 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Vineyard Sound, MA, USA - sterilised with crude oil T0
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4308
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (84.62%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F027243	Metagenome / Metatranscriptome	195	Y
F038901	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076926_1145663	F038901	AGGAG	MERFLITTESYIYAEDENKAKSLAKYIQGKQKKQYDNQCVVTKLQYAPFGMGGTWSNLIEGEYLND*
Ga0076926_1145668	F027243	AGGA	MKNKKRRPVSTLTHTTREVALDFLRWKKEQQEKSMIGHNGGPK*

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