Scaffold Ga0076920_128564

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0076920_128564

Scaffold Ga0076920_128564

Overview

Basic Information
Taxon OID	3300005732 Open in IMG/M
Scaffold ID	Ga0076920_128564 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Vineyard Sound, MA, USA - Succinate ammended T7
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1262
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location
Location Name	USA
Coordinates	Lat. (^o)	41.4417	Long. (^o)	-70.7744	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049627	Metagenome / Metatranscriptome	146	N
F104911	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0076920_1285641	F104911	N/A	MKTPINFQDYLNFRKDQVAHDMFRVQYNDLLSPGQEEVNDEVATEFIKVFNLLYIQE*
Ga0076920_1285643	F049627	N/A	MKLIKYTAAALALASCAPNYNLYNVTHVIAESDSTIDVWASNAFIRTDIKLTSDSIYFYEALGPFGELIQTETIGYTHVLDVTDSTLTIQQPDQVTT

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