Scaffold Ga0076920_124694

Overview

Basic Information

• Taxon OID: 3300005732
• Scaffold ID: Ga0076920_124694
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - Succinate ammended T7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2073
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008307	Metagenome / Metatranscriptome	335	Y
F030149	Metagenome / Metatranscriptome	186	N
F070551	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076920_1246941	F070551	N/A	PEAGGQKGLIGWLNDAGTILSGYKNEYKPKQPKAESKEIPF*
Ga0076920_1246945	F008307	AGCAG	MIKVLKTSSLEVAADFEEFFDGATVEEATKKAHNQRMPTEFAKVNIIDSKLLKANIKIVNEENDGSK*
Ga0076920_1246948	F030149	AGAAGG	MFVPVKDKLDKLVALTPDDQEKLSYYKSIVPLMIANCHKAHQTIPGYDKCKPEVEAFKWFDGINIPVHGYIDLKGDNVIIEDKCKMPRRGIVKKDGTRSWFPGKLPDRPSPHNLLQVDFYYSVFEVPVYLCYVNEKEFRVYHADNCDE