Scaffold Ga0076919_1000471

Overview

Basic Information

• Taxon OID: 3300005731
• Scaffold ID: Ga0076919_1000471
• Source Dataset Name: Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Wisconsin, Madison
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14325
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (15.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → M → Microbial Degradation Of Oil

Source Dataset Sampling Location

• Location Name: USA
• Coordinates
  • Lat. (^o): 41.4417
  • Long. (^o): -70.7744

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048244	Metagenome / Metatranscriptome	148	Y
F090610	Metagenome / Metatranscriptome	108	N
F101084	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0076919_10004712	F048244	N/A	MKVELTQKEIDRLYFDLKDYVKVLYNIDRLNELSESDKEECKIELELIEKFSKL*
Ga0076919_10004716	F101084	N/A	MTRNDLVYEFNDDMWLMYHDGTINNQDDFYDQLHDWIDNKVIYTHESKKICDALDYDIFEEHDVYGRAENWSQAAYAAIYDLLNDHNDTLTYDKMKLQEEEANA*
Ga0076919_10004717	F090610	AGAAG	MHKVWRLYIIDNKSITEISKQLNITKNKLKTQYGLK*