Scaffold Ga0068866_10017793

Overview

Basic Information

• Taxon OID: 3300005718
• Scaffold ID: Ga0068866_10017793
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3202
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027220	Metagenome	195	Y
F052347	Metagenome	142	Y
F059089	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068866_100177931	F027220	N/A	LSLFSVSSSLISPSTSSLLPAVPTNPEPRDSQHSVDEVAAGASELPGGVAGLAVPEVTVAIAPGPSEDLAPASLEVALVDPSSPQPASPSPSLASGGPSISGDVVQQF
Ga0068866_100177933	F059089	N/A	VLGRNFVDPIRLDVLPAVAEAGDHLAGTSVISKSRTFTALPGVSFRFDDVYEEYVPRLVPRGPRSVPKRGRMDGSSSGLPVSKKPRKPSTPSGTPVVASMLLGEHI*
Ga0068866_100177935	F052347	N/A	VAGGSLVIGIRGRLIPRQHCARMYVVVVGGSLVMWASFLHPAVLG*