Scaffold Ga0078894_11442780

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_11442780
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 573
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F080046	Metagenome / Metatranscriptome	115	Y
F081245	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_114427801	F080046	AGGAG	MSISLANKLVKDKFFLPPSKYINHKVVEIVSLNEESGIATVILEKYTIGRNANVYKNNNVFTIELPYSEFQNINGWSN*
Ga0078894_114427802	F081245	AGG	MGYVKSLELEYYLADEPVDELAKTLDELISKGEYK*
Ga0078894_114427803	F003965	N/A	TMCKTHIPFVPAISIVEDMRYTFCEECENNIESWYDDTDDERLPMWRDWKVSK*