Scaffold Ga0078894_10091940

Overview

Basic Information

• Taxon OID: 3300005662
• Scaffold ID: Ga0078894_10091940
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2663
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007263	Metagenome / Metatranscriptome	354	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0078894_100919401	F007263	N/A	NSTIVIDQNEFYEIIDRQHFCCDESQFVYVCKAHGEQMGCYFCEFDPYGNCECE*
Ga0078894_100919403	F002598	AGAAGG	MATKLYTIESLLIGKHYRSRNRFFSGEIISAEKREGIWYGENTEAYVIGVNAKGKIRTQYATIAVKVGE*
Ga0078894_100919404	F000447	GAG	MGYIEFARINEEGVSWVDLSKATPEELLDIEIGLFQEGAI*
Ga0078894_100919405	F006744	AGG	MNLDEFRAAVLAQREASKAEALSVLSATISATTRKEN*
Ga0078894_100919406	F017995	AGGA	MANVKQLMEIVAAPCDECGGAGFVFFGNEYDYDVEPCDCVADVEDELTLDWVNE*
Ga0078894_100919407	F004840	N/A	MEYKVTCQYDYEESPHWTGKYDDEMEAWKNFFLFKDWGMANEYSTVNIYTPSAKCYTKIFYRDGRVVTR*