NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0078894_10020967

Scaffold Ga0078894_10020967


Overview

Basic Information
Taxon OID3300005662 Open in IMG/M
Scaffold IDGa0078894_10020967 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5283
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F035764Metagenome / Metatranscriptome171Y
F105175Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0078894_1002096717F000852AGGAMATKREYLKTQGIAVGLRGRFSSAAIKAISDAETNGVTFEAEKKAPKK*
Ga0078894_1002096719F001019GAGGMSYEPSLEILEVNYGCSPGGTDTFEVYDKSEIEPVQIPIFETESLTEAVQFCYNLGKDFTVRTLAEWEERELMNA*
Ga0078894_100209673F105175AGGAGMADGINLDGFTAPKVEAPGSWNGEQYAADPASAFPASDVSNQASAQGPK*
Ga0078894_100209674F001280AGGAMCVECGCEAFGSETGIVPVTVVDVSTDGEAGLTLNMTATPDQRERFINE*
Ga0078894_100209675F001176GAGMSDNGTGMDTPPNSTPSGAVTSQEVARKNPSQKQFKSGIPTKRIPNKIDTNKHGIRRETSIVPKKTKPKKV*
Ga0078894_100209678F035764AGGAMIDWLVNKLFWWSPLREALISEATFYNSLTRTINDPESMKTASAFWDEGDGWRGWSIEGDKYYFNDVPEHDLMGVILSIEEMAKA*
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