Scaffold Ga0079204_10376439

Overview

Basic Information

• Taxon OID: 3300005654
• Scaffold ID: Ga0079204_10376439
• Source Dataset Name: Porphyra Blade Metagenome Co-Assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: USA: Blueberry Hill, Maine
• Coordinates
  • Lat. (^o): 44.342
  • Long. (^o): -68.065

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093972	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079204_103764391	F093972	AGGA	MKIGVILGRGVEGVGLTKNVVEFQKLFPGVKVFATIDKLWPRMNSMPFEKSFFRGADWDTISKPAKKFP