NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075038_11263960

Scaffold Ga0075038_11263960


Overview

Basic Information
Taxon OID3300005650 Open in IMG/M
Scaffold IDGa0075038_11263960 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1726
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046970Metagenome / Metatranscriptome150Y
F105766Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0075038_112639601F105766N/AGNVETVLQGCGALTVGKQSSDPCSEGEKKLREAYAQLAANKSTDAGHSAADGVRMLRDRCPKMMAPLRTPVDPSTHGFLIVWTLHANDAPPTTFLAGQPPPATAEAINEAFLRGVQAVKGVARNP*
Ga0075038_112639603F046970GAGGMKTIIIVALLALPAAAADEFKPIKASESVTYPLPPMPLPAVATTSNGKWAETEDSPALRVSRAWVKLGQAAGVERSEATKRLFQGWKNETAHSGQHSRTAQAAYARFLAAYKQDLDQARGIYEGVLRDVDAMDGDGDTATNADGTSQGLAKDADEQIRAADRDERLTNSACFLSPDTCQQSDPTDKALQDEIAGLVRDTLEAGGPDGGLSVYALKRKAGLLALRAKVMAAVTQRAAARLATQVATQGDGQGSPKALPLP

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