Scaffold Ga0075038_11263960

Overview

Basic Information

• Taxon OID: 3300005650
• Scaffold ID: Ga0075038_11263960
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046970	Metagenome / Metatranscriptome	150	Y
F105766	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075038_112639601	F105766	N/A	GNVETVLQGCGALTVGKQSSDPCSEGEKKLREAYAQLAANKSTDAGHSAADGVRMLRDRCPKMMAPLRTPVDPSTHGFLIVWTLHANDAPPTTFLAGQPPPATAEAINEAFLRGVQAVKGVARNP*
Ga0075038_112639603	F046970	GAGG	MKTIIIVALLALPAAAADEFKPIKASESVTYPLPPMPLPAVATTSNGKWAETEDSPALRVSRAWVKLGQAAGVERSEATKRLFQGWKNETAHSGQHSRTAQAAYARFLAAYKQDLDQARGIYEGVLRDVDAMDGDGDTATNADGTSQGLAKDADEQIRAADRDERLTNSACFLSPDTCQQSDPTDKALQDEIAGLVRDTLEAGGPDGGLSVYALKRKAGLLALRAKVMAAVTQRAAARLATQVATQGDGQGSPKALPLP