NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F105766

Metagenome / Metatranscriptome Family F105766

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F105766
Family Type Metagenome / Metatranscriptome
Number of Sequences 100
Average Sequence Length 107 residues
Representative Sequence CGDGKQKLRDAYALLAADKAPEAGRAAAEAVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP
Number of Associated Samples 82
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.00 %
% of genes from short scaffolds (< 2000 bps) 93.00 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(31.000 % of family members)
Environment Ontology (ENVO) Unclassified
(47.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.000 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144
1C688J18823_109634482
2JGI25613J43889_101636891
3Ga0007418J51697_10386861
4Ga0007413J51701_10580531
5Ga0066673_100773273
6Ga0066690_106905082
7Ga0066688_106837061
8Ga0066684_102585933
9Ga0066685_106619111
10Ga0066671_101962591
11Ga0066671_106263272
12Ga0066675_101853551
13Ga0070690_1012549172
14Ga0066686_107227971
15Ga0066689_109006051
16Ga0066681_1000047112
17Ga0066681_101156961
18Ga0066687_101050681
19Ga0066687_102616192
20Ga0066661_100680704
21Ga0066704_104104072
22Ga0066700_104189563
23Ga0066699_104854131
24Ga0068856_1023311922
25Ga0075038_112639601
26Ga0066696_109537132
27Ga0075417_106071571
28Ga0070716_1002583453
29Ga0068871_1012573502
30Ga0066659_112271921
31Ga0066659_118411641
32Ga0075426_114675871
33Ga0075435_1000679051
34Ga0075435_1010090962
35Ga0075435_1010438802
36Ga0099793_101409283
37Ga0099795_100939973
38Ga0099792_108150912
39Ga0099792_108559572
40Ga0099792_112014912
41Ga0126384_103170201
42Ga0099796_102011212
43Ga0126372_120403891
44Ga0134124_129839981
45Ga0137389_112778001
46Ga0137362_113531172
47Ga0137376_103578223
48Ga0137376_117275141
49Ga0150985_1149785061
50Ga0150985_1182045932
51Ga0150985_1218891972
52Ga0134061_12828071
53Ga0150984_1031507862
54Ga0150984_1209665782
55Ga0137398_100080666
56Ga0137395_104142832
57Ga0137396_105050661
58Ga0137419_106834142
59Ga0137416_105388901
60Ga0137416_110819742
61Ga0137410_109918831
62Ga0126369_104937133
63Ga0134110_103327282
64Ga0164304_112080992
65Ga0134081_101576072
66Ga0134081_102878791
67Ga0134081_102905062
68Ga0134078_101323811
69Ga0167669_10297311
70Ga0137420_11835923
71Ga0137409_104854941
72Ga0134073_102943331
73Ga0134089_104766421
74Ga0132258_127210191
75Ga0066667_101281333
76Ga0066662_106025831
77Ga0066662_119274482
78Ga0137408_11778303
79Ga0207662_103248981
80Ga0207708_110399782
81Ga0209234_10441093
82Ga0209239_11573411
83Ga0209153_10812713
84Ga0209686_10905861
85Ga0209687_10988312
86Ga0209152_103469842
87Ga0209802_11602991
88Ga0209377_10899593
89Ga0209806_11024631
90Ga0209807_11415883
91Ga0209807_12258452
92Ga0209156_104601332
93Ga0209474_101056404
94Ga0209474_104869732
95Ga0209648_105821701
96Ga0209588_11749402
97Ga0209701_105406881
98Ga0307471_1001087711
99Ga0307472_1009515581
100Ga0326726_121602892
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.69%    β-sheet: 1.53%    Coil/Unstructured: 58.78%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100CGDGKQKLRDAYALLAADKAPEAGRAAAEAVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNPSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains




 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
99.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Glacier Forefield Soil
Grasslands Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Permafrost Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Peat Soil
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Avena Fatua Rhizosphere
22.0%3.0%8.0%31.0%7.0%3.0%5.0%5.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J18823_1096344823300001686SoilAYALLAAEKNQDAGHAAAEGVRMLRDRCSKMTAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGEPVPNTAESINDAFLRGVQAVRPVAHNP*
JGI25613J43889_1016368913300002907Grasslands SoilCGALTAGRTSSDACGEGQQKLRDAYALLAAEKGNEAGRMAAEAVRLLRDRCPKIAAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGESAPATAEAINEGFLRAVQAVRPVAQNF*
Ga0007418J51697_103868613300003570Avena Fatua RhizosphereGQQKLRDAYALLAAEKSQDAGRAAADGVRMLRDRCQKIAAPLRTPVDPSTKGFIIVWALHANDAPPVTFLAGEQSPNTAEAINDGFLRGVQAVRPMAHNP*
Ga0007413J51701_105805313300003576Avena Fatua RhizosphereGKQSSNDGCGEGQQKLRDAYALLAAEKSQDAGRAAADGVRMLRDRCQKIAAPLRTPVDPSTKGFIIVWALHANDAPPVTFLAGEQSPNTAEAINDGFLRGVQAVRPMAHNP*
Ga0066673_1007732733300005175SoilALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP*
Ga0066690_1069050823300005177SoilALITGRSSSDSCGDSQGKLREAYSLLAGEKAQEAGRSAAEAVRALRDRCPKMSAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGEAAPNTAEAINEGFLRGVQAVRPMAHNP*
Ga0066688_1068370613300005178SoilLRDAYAQLAGEKSQDAGHTAADAVRMLRDRCSKIGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPSTAEAINDAFLRGVQAVRPLTPQPLPRGEVHAERSP*
Ga0066684_1025859333300005179SoilAAEKGADAGRVAAEAVRMLRDRCPKITAPLRTPVDPSTRGFLIVWVLHANEAPPVTFLAGEGVPATAEAINDGFLRGVQAIRPVAHNP*
Ga0066685_1066191113300005180SoilDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP*
Ga0066671_1019625913300005184SoilCGDGKQKLRDAYALLAADKAPEAGRAAAEAVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0066671_1062632723300005184SoilALLASDKGAEAGRAAAEAVRMLRDRCPKMTAPLRTPVDPGTRGFLIVWALHANDAPPVTFLAGEQAPATAEAINDGFLRGVQAVRPVAHNP*
Ga0066675_1018535513300005187SoilCGEGKQKLRDAYALLSADKAQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP*
Ga0070690_10125491723300005330Switchgrass RhizosphereQAKLREAYGLLAGEKAQDAGHAAADAVRMLRDRCPKMGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPNTAEAINDGFLRGVQAIRTLNPQPMSRGEIHAQRTP*
Ga0066686_1072279713300005446SoilSDACGEGKQKLRDAYALLSTDKGQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0066689_1090060513300005447SoilGGRSSSDACGEAQQKLRDAYALLAAEKGNEAGHMAADAVRLLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGETAPATAEAINEGFLRGVQALRTVAQNL*
Ga0066681_10000471123300005451SoilQGCGALTAPKQGSSDACGDGKQKLRDAYALLAADKAPEAGRAAAEAVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0066681_1011569613300005451SoilKPQDAGHTAADAVRMLRDRCSKIGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPSTAEAINDAFLRGVQAVRPLTPQPLPRGEVHAERSP*
Ga0066687_1010506813300005454SoilVEAVLQSCAALTGQRTTNDGCGEGQQKLRDAYALLASDKGAEAGRAAAEAVRMLRDRCPKMTAPLRTPVDPGTRGFLIVWALHANDAPPVTFLAGEQAPATAEAINDGFLRGVQAVRPVAHNP*
Ga0066687_1026161923300005454SoilQACAALTSGSKQGSDTCSDGAKKLRDAYGLLSQDKGPDAGRTAAEAVRFLRDRCPKMTAPLRTPIDPSSRGFLVVWVLHANDAPPATFLAGETAIATAEAINEGFLRGIQAVRPVTAAAHNP*
Ga0066661_1006807043300005554SoilDAYALLAAEKGSDAGRVAAEAVRMLRDRCPKITAPLRTPVDPSTRGFLIVWVLHANEAPPVTFLAGEGVPATAEAINDGFLRGVQAIRPVAHNP*
Ga0066704_1041040723300005557SoilCGEGKQKLRDAYALLSAEKSQEAGRAAADAVRSLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP*
Ga0066700_1041895633300005559SoilAYALLAAEKGAEAGRVAAEAVRALRDRCPKITAPLRTPVDPNTRGFLIVWVLHANDAPPATFLAGEGAPATAEAINDGFLRGVQAIRPVAHNP*
Ga0066699_1048541313300005561SoilLLAAEKAQDAGHAAADAVRVLRDRCSKIGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPSTAEAINDAFLRGVQAVRPLTPQPLPRGEVHAERSP*
Ga0068856_10233119223300005614Corn RhizosphereSVLQACGTLTAGRQTSSNDGCGEGQQKLREAYALLAAEKNQDAGHAAAEGVRMLRDRCSKMTAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGEPVPNIAESINDAFLRGVQAVRPVAHNP*
Ga0075038_1126396013300005650Permafrost SoilGNVETVLQGCGALTVGKQSSDPCSEGEKKLREAYAQLAANKSTDAGHSAADGVRMLRDRCPKMMAPLRTPVDPSTHGFLIVWTLHANDAPPTTFLAGQPPPATAEAINEAFLRGVQAVKGVARNP*
Ga0066696_1095371323300006032SoilKQKLRDAYALLAADKAPEAGRSAAEAVRSLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0075417_1060715713300006049Populus RhizosphereVDAVLQACGALTAGRTSSDACGEGQQKLREAYALLAAEKGTEAGRMAAEAVRLLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPATFLAGETAPATAEAINEGFLRGVQAIRAVAQNL*
Ga0070716_10025834533300006173Corn, Switchgrass And Miscanthus RhizosphereDACSDGAKKLRDAYGLLAQDKGPEAGRAAAEAVRFLRDRCTKMGAPLRTPVDPSSRGFLVVWVLHANDAPPTTFLAGETAIATAEAINEGFLRGVQAVRPVTAAAVAR*
Ga0068871_10125735023300006358Miscanthus RhizosphereDGKQKLRDAYGLLAADKGAEAGRAAADAVRQLRDRCAKMTAPLRSPVDPGSKGFLIVWTLHANDAPPVTYLAGEPAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0066659_1122719213300006797SoilGSSDDCRDGKQKLRDAYALLAGDKAPAAGRAGAEAGRLLRDRCPKLTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0066659_1184116413300006797SoilREAYALLAAEKSADAGHAAADGVRMLRDRCPKMSAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPATAEAINDGFLRGVQAVRPAAPSPLPRGEIHAERTP*
Ga0075426_1146758713300006903Populus RhizosphereDGCGDGQQKLRDAYALLAAEKGPEAGRAAADAVRSLRDRCPKMSAPLRTPVDPSTRGFLIVWTLHANDAPPVTFLAGETAPNTAEAINEGFLRGVQAVRPATAHNP*
Ga0075435_10006790513300007076Populus RhizosphereEAYSLLAAEKGSEAGRLAAEAVRLLRDRCAKMTAPLRTPVDPSSRGFLIVWVLHANDAPPTTFLAGETAPATAEAINEGFLRGVQAIRGVAQNP*
Ga0075435_10100909623300007076Populus RhizosphereSDACGEGRQKLREAYAQLAADKGQDAGRAAADAVRLLRDRCAKMTAPLRSPVDPSSRGFLIVWVLHANDAPPVTYLAGEPAPNTSDAINDAFLRGVQAVRTVAHNP*
Ga0075435_10104388023300007076Populus RhizosphereNEAGRLAAEAVRFLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANDAPPVTFLAGETAPATAEAINEGFLRGVQAIRTVAQNP*
Ga0099793_1014092833300007258Vadose Zone SoilTLTGGRASSDACGEGQQKLRDAYALLAAEKGNEAGRMAAEAVRLLRDRCPKIAAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGESAPATAEAINEGFLRAVQAVRPVAQNF*
Ga0099795_1009399733300007788Vadose Zone SoilLLAADKGPDAGRAAADAVRLLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAHNP*
Ga0099792_1081509123300009143Vadose Zone SoilVSNVDSVLQACGALTGGRTSSDACGEGQQKLRDAYALLAAEKGTEAGHLAADAVRLLRDRCQKMAAPLRTPVDPSSRGFLIVWVLHANDAPPATFLAGEGAPATAEAINDGFLRGVQALRAVAQNL*
Ga0099792_1085595723300009143Vadose Zone SoilGPDAGRAAAEAVRFLRDRCTKMTPPLRTPVDPSSRGFLVVWVLHANDAPPATFLAGETAIATAEAINEGFLRGVQAVRPIASAAKNP*
Ga0099792_1120149123300009143Vadose Zone SoilDACGEGQQKLREAYALLAAEKGSEAGRMAAEAVRLLRDRCPRMTAPLRTPVDPGSRGFLIVWVLHANEAPPATFLAGETAPATAEAVNEGFLRGVQAIRAVAQNL*
Ga0126384_1031702013300010046Tropical Forest SoilLAADKPQDAGRTAADAVRVLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANDAPPATFLAGDPAPNTAEAINDAFLRGVQAVKPIAHNP*
Ga0099796_1020112123300010159Vadose Zone SoilAAGRTSSDACGEGQQKLREAYALLAAEKGSEAGRMAAEAVRLLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANEAPPVTFLAGETAPATAEAINEGFLRGVQAIRAVAQNL*
Ga0126372_1204038913300010360Tropical Forest SoilGCGAVAGPKQSASDPCADGKQKLRDAYAQLAADKPQDAGRTAADAVRVLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANDAPPATFLAGDPAPNTAEAINDAFLRGVQAVKPIAHNP*
Ga0134124_1298399813300010397Terrestrial SoilSSDSCSDGKQKLRDAYGLLAADKGPEAGRAAADAVRQLRDRCPKMTAPLRSPVDPGSKGFLIVWTLHANDAPPVTYLAGEPAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0137389_1127780013300012096Vadose Zone SoilAAGNVEAVLQGCAALITGRSSSDSCGDGQGKLREAYALLAGEKAQEAGRSAAEAVRALRDRCPKMSAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPNTAEAINEGFLRGVQAVRPMAHNP*
Ga0137362_1135311723300012205Vadose Zone SoilVQGCGALNAGKQPTSDACGEGRQKLRDAYALLAADKGPDAGRAAAEAVRMMRDRCAKMTAPLRSPVDPSSRGFLIVWVLHANDAPPVTYLAGEPAPNTSDAINDAFLRGVQAVRTVAHNP
Ga0137376_1035782233300012208Vadose Zone SoilACGDGKQKLRDAYALLAADKAPEAGRAAAEGVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0137376_1172751413300012208Vadose Zone SoilSKQKLRDAYALLAADKPQDAGRTAADAVRMLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANDAPPATFLAGDTAPNTADAINDAFLRGVQAVRPVAHNP*
Ga0150985_11497850613300012212Avena Fatua RhizosphereRDAYGLLAQDKGPEAGRAGAEAVRFLRDRCTKMGAPLRTPVDPSSRGFLVVWVLHANDAPPTTFLAGETAIATAESINEGFLRGVQAVRPVARNP*
Ga0150985_11820459323300012212Avena Fatua RhizosphereATTDGCGDGQAKLREAYGLLASEKAQDAGHAAADAVRMLRDRCPKMGAPLRSAVDPSTRGFLIVWVLHANDAPPVTFLAGETAPNTAEAINDGFLRGVQAIRTLNPQPVSRGEIHAQRTP
Ga0150985_12188919723300012212Avena Fatua RhizosphereDAGRTAAEGVRLLRDRCSKITAPMRTPVDPSTKGFLIVWTLHANDAPPVTFLVGETAPNTAEAINDAFLRGVQAVRPVAHNP*
Ga0134061_128280713300012399Grasslands SoilSCSDAQKKLRDAYGLLAQDKDQDARHAAAGAVSLMRDRCPKMAAPLRTPVDPGSRGFLIVWVLHANDAPPTTFLAGETSIATAESINEGFLRGVQAVRPMAAAARSNP*
Ga0150984_10315078623300012469Avena Fatua RhizosphereAYGLLAQDKDQDARHAAASAVSLMRDRCPKMAAPLRTPVDPSSRGFLVVWVLHANDAPPTTFLAGETSIATAEAINEGFLRGVQAVRPMAAAARSNP*
Ga0150984_12096657823300012469Avena Fatua RhizosphereVLTNGRQVSSNDGCGEGKQKLRDAYALLAAEKGPDAGRTAAEGVRLLRDRCSKITAPMRTPVDPSTKGFLIVWTLHANDAPPVTFLVGETAPNTAEAINDAFLRGVQAVRPVAHNP*
Ga0137398_1000806663300012683Vadose Zone SoilNAAKQGPSDSCGDGRQKLRDAYALLAADKGPDAGRAAADAVRLLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAHNP*
Ga0137395_1041428323300012917Vadose Zone SoilDAVLQGCGALNAAKQGPSDSCGDGRQKLRDAYALLAADKGPDAGRAAADAVRLLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAHNP*
Ga0137396_1050506613300012918Vadose Zone SoilGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP*
Ga0137419_1068341423300012925Vadose Zone SoilCGDGRQKLRDAYALLAADKGPDAGRAAADAVRLLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAHNP*
Ga0137416_1053889013300012927Vadose Zone SoilQGPSDSCGDGRQKLRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAQNP*
Ga0137416_1108197423300012927Vadose Zone SoilSASNVDAVLQACGALTAGRTSSDACGEGQQKLREAYALLAAEKGSEAGRMAAEAVRLLRDRCPRMTAPLRTPVDPGSRGFLIVWVLHANEAPPATFLAGETAPATAEAINEGFLRAVQAIRAVAQNL*
Ga0137410_1099188313300012944Vadose Zone SoilRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRPVAQNP*
Ga0126369_1049371333300012971Tropical Forest SoilGALTGGRTSSDACGEGQQKLRDAYALLAADKANEAGRLAAEAVRSLRDRCSKITAPLRTPVDPSSRGFLIVWVLHANDAPPVTFLAGETAPATAEAINEGFLRGVQAIRTVAQNP*
Ga0134110_1033272823300012975Grasslands SoilQQKLRDAYALLAAEKGTEAGRMAADAVRLLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGETAPATAEAINEGFLRGVQALRTVAQNL*
Ga0164304_1120809923300012986SoilDSCSDGKQKLRDAYGLLAADKGPEAGRAAADAVRQLRDRCAKMTAPLRSPVVPGSEGFLIVWTLHANDAPPVTYLAGEPAPNTADAINDAFLRGVQAVRTVAHNP*
Ga0134081_1015760723300014150Grasslands SoilQACGALTAGRTSSDPCGEGQQKLRDAYALLAAEKGTEAGRMAADAVRLLRDRCPKMTAPLRTPVDPSSRGFLVVWVLHANDAPPATFLAGETAIATAEAINEGFLRGVQAVRPVASAARNP*
Ga0134081_1028787913300014150Grasslands SoilLTSGKASNDGCGEGQAKLRDAYAQLAGEKSQDAGHTAADAVRMLRDRCSKIGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPSTAEAINDAFLRGVQAVRPLTPQPLPRGEVHAERSP*
Ga0134081_1029050623300014150Grasslands SoilACGDGKQKLRDAYALLAADKAPEAGRAAAEAVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP*
Ga0134078_1013238113300014157Grasslands SoilNVDAVLQGCGALNAAKQGLSDSCGDGRQKLRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP*
Ga0167669_102973113300015024Glacier Forefield SoilAALEACAALSEPKSSVDACGEGQQKLRDAYALLAAEKPTEAGRAAAEAVRGLRDRCPRMSAPLRTPVQPSTKGFLIVWALHANDAPPVTWLAGERAPNTADAINDAFTRGVQALRPYTSHKS*
Ga0137420_118359233300015054Vadose Zone SoilKLRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHANDAPPVTFLAGETAPNIADAINDAFLRGVQAVRPVAQNP*
Ga0137409_1048549413300015245Vadose Zone SoilRDAYALLAADKGPDAGRAAAEAVRMMRDRCAKMTAPLRSPVDPSSRGFLIVWVLHANDAPPVTYLAGEPAPNTSDAINDAFLRGVQAVRTVAHNP*
Ga0134073_1029433313300015356Grasslands SoilALQGCAALTSGKASNDGCGEGQAKLRDAYAQLAGEKPQDAGHTAADAVRMLRDRCSKIGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFLAGETAPSTAEAINDAFLRGVQAVRPLTPQPLPRGEVHAERSP*
Ga0134089_1047664213300015358Grasslands SoilCGALTNGSKQTSDACSDGAKKLRDAYGLLAQDKGPEAGRAAAEAVRFLRDRCTKMGAPLRTPVDPSSRGFLVVWVLHANDAPPTTFLAGETAIATAESINEGFLRGVQAVRPVARNP*
Ga0132258_1272101913300015371Arabidopsis RhizosphereRQTSSNDGCGEGQQKLREAYALLAAEKSQDAGHTAAEGVRLLRDRCSKMTAPLRTPVDPSTRGFLIVWVLHANDAPPVTFLAGEPVPNIAESINDAFLRGVQAVRPVAHNP*
Ga0066667_1012813333300018433Grasslands SoilPKQGSSDACGDGKQKLRDAYALLAADKAPEAGRAAAEAVRFLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP
Ga0066662_1060258313300018468Grasslands SoilADACGEAQQKLRDAYALLAAEKGSDAGRVAAEAVRMLRDRCPKITAPLRTPVDPSTRGFLIVWVLHANDAPPASFLAGEGAPATAEAINDGFLRGVQAIRPVAHNP
Ga0066662_1192744823300018468Grasslands SoilRDAYALLSADKAQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP
Ga0137408_117783033300019789Vadose Zone SoilSCGDGRQKLRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP
Ga0207662_1032489813300025918Switchgrass RhizosphereKLRDAYGLLAADKGAEAGRAAADAVRQLRDRCAKMTAPLRSPVDPGSKGFLIVWTLHANDAPPVTYLAGEPAPNTADAINDAFLRGVQAVRTVAHNP
Ga0207708_1103997823300026075Corn, Switchgrass And Miscanthus RhizosphereGLLAADKGAEAGRAAADAVRQLRDRCAKMTAPLRSPVDPGSKGFLIVWTLHANDAPPVTYLAGEPAPNTADAINDAFLRGVQAVRTVAHNP
Ga0209234_104410933300026295Grasslands SoilDAVLQGCGALTAARQGSSDACGEGKQKLRDAYALLSTDKAQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP
Ga0209239_115734113300026310Grasslands SoilKLRDAYALLAAEKGNEAGHMAADAVRLLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGETAPATAEAINEGFLRGVQALRTVAQNL
Ga0209153_108127133300026312SoilQKLRDAYALLASDKGAESGRAAAEAVRMLRDRCPKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPNTADAINDAFLRGVQAVRTVAHNP
Ga0209686_109058613300026315SoilCGEGKQKLRDAYALLSTDKGQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP
Ga0209687_109883123300026322SoilDAVLQACAALTSGSKQGSDTCSDGAKKLRDAYGLLSQDKGPDAGRTAAEAVRFLRDRCPKMTAPLRTPIDPSSRGFLVVWVLHANDAPPATFLAGETAIATAEAINEGFLRGIQAVRPVTAAAHNP
Ga0209152_1034698423300026325SoilGALTGGRSSSDACGEAQQKLRDAYALLAAEKGNEAGHMAADAVRLLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGETAPATAEAINEGFLRGVQALRTVAQNL
Ga0209802_116029913300026328SoilSDACGEGKQKLRDAYALLSTDKGQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP
Ga0209377_108995933300026334SoilCGEAQQKLRDAYALLAAEKGNEAGHMAADAVRLLRDRCPKMTAPLRTPVDPSSRGFLIVWVLHANEAPPATFLAGETAPATAEAINEGFLRGVQALRTVAQNL
Ga0209806_110246313300026529SoilACGEGKQKLRDAYALLSTDKGQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP
Ga0209807_114158833300026530SoilYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP
Ga0209807_122584523300026530SoilCAALASGSKQGSDSCSDGAKKLRDAYGLLSQDKGPEAGHAAAEAVRFLRDRCPKMTAPLRTPIDPSSRGFLVVWVLHANDAPPTTFLAGETAIATAEAINEGFLRGIQAVRPVTAAVRNP
Ga0209156_1046013323300026547SoilLTAARQGSSDTCGEGKQKLRDAYALLSADKAQEAGRAAADAVRSLRDRCQKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETAPDTADAINDAFLRGVQAVRPVAHNP
Ga0209474_1010564043300026550SoilKKLRDAYGLLSQDKGPDAGRTAAEAVRFLRDRCPKMTAPLRTPIDPSSRGFLVVWVLHANDAPAATFLAGETAIATAEAINEGFLRGVQAVRPVTAAAHNP
Ga0209474_1048697323300026550SoilEGQQKRRDAYGLLASDKGAEAGRAAAEAVRMLRDRCPKMTAPLRTPVDPGTRGFLIVWALHANDAPPVTFLAGEQAPATAEAINDGFLRGVQAVRPVAHNP
Ga0209648_1058217013300026551Grasslands SoilLANGRSSNDGCGDAQQKLREAYALLASDKAQDAGRAAAEAVRTLRDRCPKISAPLRTPVDPSTRGFLIVWTLHANDAPPVTFLAGESTPTTAESINDAFLRGVQAVRPVAHNP
Ga0209588_117494023300027671Vadose Zone SoilNAAKQGPSDSCGDGRQKLRDAYALLAADKGPEAGRTAADAVRFLRDRCPKITAPLRTPVDPGSRGFLVVWVLHASDAPPVTFLAGETAPNTADAINDGFLRGVQAVRPIAHNP
Ga0209701_1054068813300027862Vadose Zone SoilGEGQQKLRDAYALLANDKGQDAGRTAAEAVRLLRDRCPKLGAPLRTPVDPGTRGFLIVWVLHANEAPPVTFLAGETAPNTAEAINEGFLRGIQAVRPVARNP
Ga0307471_10010877113300032180Hardwood Forest SoilALLAADKAQEAGRAAADAVRLLRDRCAKMTAPLRTPVDPGSRGFLIVWVLHANDAPPVTFLAGETVPDTAEAINEAFLRGVQTVRPVAHNP
Ga0307472_10095155813300032205Hardwood Forest SoilAKLRDAYAQLASEKPQDAGHTAADAVRSLRDRCPKMGAPLRSPVDPSTRGFLIVWVLHANDAPPVTFMAGETAPSIAEAINDAFLRGVQAVRPIPAQPLSHGEAHAERSP
Ga0326726_1216028923300033433Peat SoilLDAVLQGCGVLTNASRLSGSDSCADGKQKLRDAYAQLAADKAPDAGRTAADAVRMLRDRCAKMTAPLRTPVDPGSRGFLIVWTLHANDAPPLTFLAGEPAPNTADAINDGFLRGVQAVRSVARNP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.