Scaffold Ga0068852_100000022

Overview

Basic Information

• Taxon OID: 3300005616
• Scaffold ID: Ga0068852_100000022
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 125196
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (78.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031439	Metagenome / Metatranscriptome	182	Y
F049823	Metagenome	146	Y
F081191	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068852_100000022112	F031439	AGG	MYLIPIALIILLALIAVAWSPIFALIIFVIGFVAFLAWAASNKRADEKLAPPEQPGRQPHNENDTPTGIWGERRPS*
Ga0068852_10000002277	F081191	GAGG	VTQRKIRLPVPEEVVAAIVELADDGFCRRGELVQRFPRLGERDLRRAVRRAVSQGLVLERRGPDGAWHVAVSSEGWNLHRSG*
Ga0068852_1000000228	F049823	AGGA	VPPQPVQGSFEVARGVIPQERIDDALRLLHLDLLQRGASAEELGEWLWGMHWFPHLKEREEILALAQSLPEEWRTGRPCEPQILLQFPHTGPAPEIEFHLDQEPPWAGDSTYLRIVGVPLSPWRGDNGGLLVKTADGPAPVEADPGDAIVMSPDLPHSGGVNLTGALRYGVYFRWLSE*