Scaffold Ga0074649_1009964

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1009964
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6830
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009459	Metagenome	317	Y
F048912	Metagenome	147	Y
F088553	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100996413	F088553	GGAGG	MKEFEVELKATTYRTFYVTAESKEEAEELAFHALDNDEEISGTWKDEARVSFIEPKSE*
Ga0074649_10099645	F048912	N/A	MDYDSWLTEFLDYEDDDGLTDEERQELKDLYDEWVISQYEQTLD*
Ga0074649_10099648	F009459	N/A	MKEITLEPSVMIEELMYWIHQNEMGGDAIDPANRWLPLYLELQKLKDKLDNDRYDTYVSVSADETKTK*