Scaffold Ga0074649_1005163

Overview

Basic Information

• Taxon OID: 3300005613
• Scaffold ID: Ga0074649_1005163
• Source Dataset Name: Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 11542
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment → Saline Water And Sediment Microbial Community From Etoliko Lagoon, Greece

Source Dataset Sampling Location

• Location Name: Greece: Etoliko Lagoon
• Coordinates
  • Lat. (^o): 38.4825
  • Long. (^o): 21.315
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010532	Metagenome	302	N
F015793	Metagenome / Metatranscriptome	252	Y
F032867	Metagenome / Metatranscriptome	179	Y
F046985	Metagenome	150	N
F054777	Metagenome / Metatranscriptome	139	N
F069855	Metagenome	123	N
F087019	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0074649_100516312	F087019	GAGG	MIGEIIGLGFVTVFMLFCLIGVTFLIADRHYDKKRKDN*
Ga0074649_100516313	F003051	AGGAG	MKTKILKNKVTIDMSVSEYDTLFKYIGKLDSILNTLHETNDLWLSDIHNLSSLKYELVEMLDAEWNTDTYRYIKRGSK*
Ga0074649_100516317	F010532	AGGAG	MNRTLYKKLEDICAREYILSKLSATKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYLNKPYESTSRNEQALRGA*
Ga0074649_100516318	F046985	GAGG	MIVDTKEELNEWWLEEFGIDVDASKYVEIRVPAKTYAMLVQIGIFNIHGKGISDWASKVGVEAINIRTDFSVNMLLRDFQAVKMAVMLRKYPFDRGYLQQATKIRRNILQHLRAFNPIYAEELKSKLFKRRVA*
Ga0074649_100516319	F032867	AGGAG	MDELEKMIDDLIDNHYRVQHLIGTEADESEYLADISEEDDDS*
Ga0074649_100516321	F054777	AGGAG	MSNKINDETLERLYEDAIADDERGLLEVKIKDMVLRYGLHADDDRDEILQLIAEDEFYEQFT*
Ga0074649_100516326	F015793	GAGG	MLSIKTFEDRYNNNKKFHHVNLMGLKFRVANNKRSKRKSNKIFYSTDRGLVFNLLPSRYLCLITK*
Ga0074649_100516328	F069855	GAGG	MAMKKVIELHPLGGTVVKLKHVDGVEPKKLSKNQRKKLLKGYYSKEKHSQLISSIMHGKFYNRKSNNKNGLLPSQYGYVRKSVYKLNPEILAHMIREQEKRIAI*