Scaffold Ga0066835_10009978

Overview

Basic Information

• Taxon OID: 3300005606
• Scaffold ID: Ga0066835_10009978
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV84
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2391
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012575	Metagenome	279	Y
F016956	Metagenome / Metatranscriptome	243	Y
F055560	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066835_100099785	F012575	GAG	MSVTEYIDNTAFVYKIVSDYKEVYIQWHMKDLPHLFTGRASSHEEKIEQYKSVLKELKKLNNKTKL*
Ga0066835_100099786	F016956	N/A	MKLERWKAPKEVAVAIIDLALEHIKKVESNPEVKTEGDNFDYWNSYDLGDDNYIDYNIYCGDEWCIYKQDGSGEYEYTDPSTWSWDVACYAVDPPTKDFQYHSIDTGREQYLFSYNKNGNKEEREYIK*
Ga0066835_100099789	F055560	N/A	MKKPINQTDIDELFTSLKPSKKEQITIWIISPVIVLATWAILIFMCSL*