Scaffold Ga0066834_10074836

Overview

Basic Information

• Taxon OID: 3300005596
• Scaffold ID: Ga0066834_10074836
• Source Dataset Name: Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF43B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1118
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location

• Location Name: Pacific Ocean: Eastern Tropical North Pacific
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F036024	Metagenome / Metatranscriptome	171	Y
F066274	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066834_100748362	F036024	N/A	MSIEYRMGRIGDEDTFLKLDEAQKICQAKFAEYISEIKYEDGEEAIDDYAWHIVTPERFEKDWENDERLKKTDEIKAKYRNLVKNNRVVFFEIDWN*
Ga0066834_100748363	F066274	GAGG	MMIELTSDEIGWVKYALTRATSTMEGRDPDMTRKEEKLLMRLVRKIEKQEEEYLK*
Ga0066834_100748364	F013467	N/A	MTFGNLRNWVWCEDCLEWKDADEVNFVSIEEGSFGKDMLTFTCDKCGNDNKNNIIQSSTRPRG*