Scaffold Ga0070761_10000045

Overview

Basic Information

• Taxon OID: 3300005591
• Scaffold ID: Ga0070761_10000045
• Source Dataset Name: Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86756
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (67.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000949	Metagenome / Metatranscriptome	823	Y
F003137	Metagenome / Metatranscriptome	505	Y
F014422	Metagenome / Metatranscriptome	263	Y
F039237	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070761_100000455	F003137	N/A	MKVGVRTKMARKKKLKRFGAVQAVKELARERMGAPPAEKVVPHKNKKAGKHKPTLGKMLEDADA*
Ga0070761_1000004556	F000949	GGA	MTTEALSPRSRRDGPFYLLAALAGIGTGWADVAVNDLLFTALLVLMACMLLGLLRPRWPWRWVVVVGMFIPLTELAAYLVRTVKPTRAQVYGSFLAALPGLAGAYGGAVMRGALDHLRQGK*
Ga0070761_1000004572	F014422	N/A	MSIKLLPASVNPVEPLQAPEVSASLVPLTQRAITTQAGQNSLVRSADTFAWSTSARLEQANWIDGTPVEDSQSDETASAGEYVSGWAGSRPIESTAIAHYLFYAAAPAGWSGRLIDVYA*
Ga0070761_1000004576	F039237	AGGAG	MDTNVMIMFASVLCTMTALSFMELRRIRKRLEAKPEPKPEPKPEPK*