Scaffold Ga0049084_10020748

Overview

Basic Information

• Taxon OID: 3300005585
• Scaffold ID: Ga0049084_10020748
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2623
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014847	Metagenome / Metatranscriptome	259	Y
F028095	Metagenome	192	Y
F028145	Metagenome / Metatranscriptome	192	N
F074576	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049084_100207482	F014847	AGG	MEYESNADILNDLMDQIHTLHKENAKLRQEVEQLKEINSELNRKLKSIQALFL*
Ga0049084_100207483	F028145	N/A	MKIFLVFFINLAVSLFASILLYKLFKIDISPVTISLATIVIYICLPQRFHDWVSEK*
Ga0049084_100207484	F074576	N/A	MEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
Ga0049084_100207485	F028095	N/A	MSEQTYMNLKDAVKRPKLSKEMVINPVNRENKDFKRVVDQYQKWCSTVGGYKDSRVTYENDIIDCLFETDTDGYALATFLKERAYIEPDSELVDILDCVSNVKYSLTKQIIGQWTKENFLEIPSDVIGKKVSAKQGYKKYENHYITTIRPDTYEVTISDNINKKGGYIVGFENVTLL*