Scaffold Ga0049082_10119228

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10119228
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 922
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016656	Metagenome	245	Y
F053841	Metagenome / Metatranscriptome	140	Y
F069840	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_101192281	F016656	N/A	EGVDLSAADTIVFVECTWSTSALEQASSRVENINKSGVKPVIYLLTIRASLDHNVLKRVLEKQNIVNQII*
Ga0049082_101192283	F053841	AGGAG	MRAIIKAALAIDELQYDLENISADDGKQIEDYTDAEIVSEAKYVLDQFQEALGSHLNYEDLSGENGPERQKWARGEVRKLKALIKKFTA*
Ga0049082_101192284	F069840	N/A	MTATTPTQRVAALRQRRKDAGLVRVEYYLTKPQAEKVKALITKLTKEQHAAH*