Scaffold Ga0049082_10008425

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10008425
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3459
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F024314	Metagenome / Metatranscriptome	206	Y
F027847	Metagenome / Metatranscriptome	193	Y
F056558	Metagenome / Metatranscriptome	137	Y
F084234	Metagenome / Metatranscriptome	112	Y
F095473	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_100084252	F024314	N/A	MNEDQKLTPEQAQVILLFQIEQKLRFVIAKQVEEKFHGSYHNASHDIAQFIRNMA*
Ga0049082_100084253	F056558	N/A	MGILDNLENAWDGNFEFESKPMVNSDAMGKEIFWQDLGRPEEDQSLAVKLFSETCCTDCSCKNE*
Ga0049082_100084254	F084234	AGGAG	MFDWFTNPFSVLFDWIGYFLIFGAVVTMILVIGAVVAIPLGLKLLGVAFAKTIVVETSKVIKDLGIANIDLKQQKETKQMKAYLDRKVVPILSKIS*
Ga0049082_100084255	F095473	GAG	MNTMTCQVINCDSTELVYSGTDAFMLGINTETYCYNCANAYAQINRVMSKVRQDYLDSLTPVSSLTTSD*
Ga0049082_100084257	F027847	GGA	MNPFTALQDFLDENVAYGIIGAFIGVGISVALCFILGA*
Ga0049082_100084258	F003965	AGGA	MNSNVIIKCVEHTPNKPAISNVADEQFTFCEICENNIERWYNDTDPERLPMWTDWKVSK*