Scaffold Ga0049082_10006322

Overview

Basic Information

• Taxon OID: 3300005584
• Scaffold ID: Ga0049082_10006322
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3953
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F004924	Metagenome / Metatranscriptome	418	Y
F005705	Metagenome / Metatranscriptome	392	Y
F010227	Metagenome / Metatranscriptome	306	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049082_1000632210	F010227	AGGAG	MQATQFNVSDKLTLAGTETDTDSISTTYDCNVLVQLAGDSIWDCELEAVTVTSIHIHENFDEDGDSSIHIAVCYTVDGDAEYEDSWRLYTDSGFVDAISTLLGTDVMFTEQGMQDDGYASMEL*
Ga0049082_1000632211	F004924	AGGAG	MKQSALKLAIFEKLAEVEDMLLEATLDGEQLAEMDCFAELEGALHKLTEAVDYYVD*
Ga0049082_100063223	F005705	AGGAG	MKIVVKMPQKTRAHLVLFCANTPFKQKRVESKIAYKRQPKHKGRDNG*
Ga0049082_100063225	F000652	AGAAGG	MTGFQSKKLSAIDKLKESGMKKVIVRTELMQELEVPEHWEREDVLDFLGEFQSFRTAFQGVSNEDQSARIIDLGVVVETVEQLGEETFDE*