Scaffold Ga0049085_10000720

Overview

Basic Information

• Taxon OID: 3300005583
• Scaffold ID: Ga0049085_10000720
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12940
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (70.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.5046
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F001507	Metagenome / Metatranscriptome	681	Y
F027847	Metagenome / Metatranscriptome	193	Y
F034573	Metagenome	174	Y
F093845	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049085_1000072012	F001507	N/A	MQPTTIDELITEIYEDNFSHFEFIENMGGDCDCNLHMTMSTITKYWGE*
Ga0049085_1000072015	F000684	AGGA	MTLGGLTYQIGDLFTTSKTGVTGRISNFTPINAKLTRVGLTLASGAHRFAMVKTSK*
Ga0049085_1000072035	F027847	AGG	MTNPIMAVIDWIDENADYAPIGAFIGLGIALVLAFTLGA*
Ga0049085_1000072038	F093845	AGGAG	MIPTTLTTTNGTTKKMSFDTKENVIKFIELYANALPIGTAINIDAPLIGIHSGWIQGKAKVTQ*
Ga0049085_100007204	F034573	GGA	MYSIRRGHQTTKEEKAAQKISVLLSDFTLDLEKVGYYLARATPYLIYRRSLEVLESAQFQSETVEMNRIGYNHDKLF*