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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005582 Open in IMG/M |
| Scaffold ID | Ga0049080_10000277 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16939 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (88.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.504638 | Long. (o) | -83.045851 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001688 | Metagenome / Metatranscriptome | 651 | Y |
| F011067 | Metagenome / Metatranscriptome | 295 | Y |
| F030083 | Metagenome | 186 | N |
| F057204 | Metagenome | 136 | Y |
| F069840 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049080_1000027720 | F011067 | AGGA | MNRVCDAGGICPHKPQCDHFCHFTNAGNEPETRKVKPYPTVPDDIEPVPETWQMVGSVVVGFVLVALMVVFLLLFFTGLWVWSLLI* |
| Ga0049080_1000027721 | F001688 | GGAG | MMWKYLWTELRLMLKTVTPIQAVTHELLHAEHALLQAESGVEYATALVAYNKNRVKRLRAYLDKTEEVKDAA* |
| Ga0049080_1000027723 | F030083 | AGGAG | MKLMHEHITDLCRQPLECWYEWEPSEPEILEAGVVIEPAVPELVYLVEVWVNGADIFELLSDDLKDVIEIAIREDRYK* |
| Ga0049080_1000027727 | F057204 | AGGAG | VKSYPQADEWKDDDRVWCKKCGNAESRIQRWNFMAEDFEKMRRLNEKPAQWMFHGAETKNGWVRILFNQDFCTKTDLHCILDVPHRCHMFVDQDAAKPAESVESTSWWELT* |
| Ga0049080_1000027732 | F069840 | N/A | MTTTPTQRVQALRQRRKDAGLVRVEYYLTKPQAEKVKALITKLTKEQHAAHHP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |