Scaffold Ga0049081_10015344

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10015344
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2896
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015434	Metagenome / Metatranscriptome	254	Y
F023275	Metagenome / Metatranscriptome	210	Y
F034574	Metagenome / Metatranscriptome	174	Y
F070095	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_100153441	F034574	N/A	MKITYSIWQGSLYKGTLTATNMKEVIATVKDLNEGNTSVKFDHMVTNISQVA*
Ga0049081_100153442	F070095	AGGTGG	VEFYADLDYISFYINNLYPNGVAIEIPTWLLFGTVAFIWSVKQWKK*
Ga0049081_100153445	F023275	N/A	MAFLENLESSIADNDGMPSKKVTDAIKEMLEDPEHHALMERLKYMEDHGI*
Ga0049081_100153446	F015434	GGAGG	MESEYPESWSRHTPKGMNILSETTKSTKCCDTCECGQNEEEKFNKLMETQTSFEE*