Scaffold Ga0049081_10002158

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10002158
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7408
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001923	Metagenome / Metatranscriptome	617	Y
F036603	Metagenome	169	N
F042894	Metagenome	157	N
F105180	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000215810	F001923	N/A	MSPPPPIDGDSTQSLIKDGLVASILGGLAMTARLLLSTEPVTPGWVIRRVCAAAITAALVGFAIQEHIASPGLRMGVIGAAGYAAPEVMDYVLKYLKARGDAEVAKVSKKPNGKKKPTKRSK*
Ga0049081_1000215811	F036603	GAG	MWATVVLLLCTGVGAVSVAIITDHILSSFAESSTMALLITDAGTKSDDANLERQLTSATMGLRACRDLGWALAVGCLGVGVSVFLRFRRANAS*
Ga0049081_1000215814	F042894	N/A	MSPDMLASPAHVIRGLSYQIAYARDRVLQGDWTEKYALGRIQVCAAVAEENLRESHNCMAVSIYANLTTGCRALFTWTYVDRNGEKDSGSVHPTIDGR*
Ga0049081_100021586	F105180	N/A	MSYLILFLTGLLIGAVAGLLIYRKHAASLKASEDKGKSILDALKGR*