Scaffold Ga0049081_10001783

Overview

Basic Information

• Taxon OID: 3300005581
• Scaffold ID: Ga0049081_10001783
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8116
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F014495	Metagenome / Metatranscriptome	262	Y
F029412	Metagenome	188	Y
F093500	Metagenome	106	N
F100671	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0049081_1000178315	F014495	GGAG	MIKTPQAAPLGRNYRVSSESAFPLRDINGKTWAERRKEKEQGK*
Ga0049081_1000178317	F009516	AGG	MSRPMFYPMGTLEVGDVGTMPATDKGAAKRTSRNVSQYGIRHGKAFKCRTAGGVTFITRWM*
Ga0049081_1000178318	F029412	GGA	MINERIEALQKRERVCWDMSEVFLHAKDAHGLHDMGVEIQGIQWAIRELEGLLRK*
Ga0049081_1000178320	F100671	GGA	MTKEIKYRMDPKTGRPLHLLGDLAAVLNDDGSTVTEHYDENGRLYRTSYKSVPYPKDWKPE*
Ga0049081_1000178321	F093500	GGA	MTDEEIDAFENYDQRAEATLAYRLMEHLAFRGIITDDEVCHLRYPPCELIVDAEAAWDE*