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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300005581 Open in IMG/M |
| Scaffold ID | Ga0049081_10001474 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8885 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (76.19%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005502 | Metagenome / Metatranscriptome | 398 | N |
| F007747 | Metagenome / Metatranscriptome | 345 | Y |
| F016963 | Metagenome | 243 | N |
| F020510 | Metagenome / Metatranscriptome | 223 | Y |
| F042872 | Metagenome | 157 | Y |
| F072095 | Metagenome | 121 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0049081_1000147414 | F016963 | GGAGG | VIEILPEQSTQEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL* |
| Ga0049081_1000147415 | F005502 | AGG | MRTLLSILALLGFTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVIK* |
| Ga0049081_1000147417 | F020510 | AGGCGG | VSLQDILAMFSARVIGTYTPEQYAEQVIIARNNRMRWGMGQW* |
| Ga0049081_1000147420 | F007747 | AGGAG | MKDLGKITFGKARPAPKQVLVDVSYDAKTAKALHSFGLRQLKKDEEAVIQYVIVKALGAFAKK* |
| Ga0049081_100014746 | F042872 | AGG | VGSNPTPSDPYHYNDLCRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPDAFVYHPNPAVCRMWHAQHEASK* |
| Ga0049081_100014748 | F072095 | AGGAG | VSVRDLEQEGVLPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILECLLKKSGVQS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |